Evidence map›Paper›PMID 30770239›Full record

ArticleMolecular cell2019

The RNase PARN Controls the Levels of Specific miRNAs that Contribute to p53 Regulation.

Siddharth Shukla, Glen A Bjerke, Denise Muhlrad, Rui Yi, Roy Parker

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
10.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 112 citations in OpenAlex.

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  7. The biogenesis and regulation of animal microRNAs.Nature reviews. Molecular cell biology · 2025
    Review
  8. Review
  9. ncRNA Editing: Functional Characterization and Computational Resources.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Siddharth ShuklaDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.
Glen A BjerkeDepartment of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80303, USA.
Denise MuhlradDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA.
Rui YiDepartment of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80303, USA.
Roy ParkerDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address: roy.parker@colorado.edu.
University of Colorado Boulder · US

Funding

MicroRNA-mediated Regulation in Mammalian SkinR01AR059697 · NIAMS · UNIVERSITY OF COLORADO · PI YI, RUI · 2010 to 2020
$3.9M
Genetic Analysis of MicroRNA Functions in Skin Stem Cells In VivoR01AR066703 · NIAMS · UNIVERSITY OF COLORADO · PI YI, RUI · 2014 to 2024
$3.9M
Stress Granules in Yeast and MammalsR01GM045443 · NIGMS · UNIVERSITY OF COLORADO · PI PARKER, ROY · 1991 to 2021
$3.3M
Howard Hughes Medical InstituteNIAMS NIH HHS R01 AR059697NIAMS NIH HHS R01 AR066703NIGMS NIH HHS R01 GM045443
6 · The paper itself

Abstract

PARN loss-of-function mutations cause a severe form of the hereditary disease dyskeratosis congenita (DC). PARN deficiency affects the stability of non-coding RNAs such as human telomerase RNA (hTR), but these effects do not explain the severe disease in patients. We demonstrate that PARN deficiency affects the levels of numerous miRNAs in human cells. PARN regulates miRNA levels by stabilizing either mature or precursor miRNAs by removing oligo(A) tails added by the poly(A) polymerase PAPD5, which if remaining recruit the exonuclease DIS3L or DIS3L2 to degrade the miRNA. PARN knockdown destabilizes multiple miRNAs that repress p53 translation, which leads to an increase in p53 accumulation in a Dicer-dependent manner, thus explaining why PARN-defective patients show p53 accumulation. This work also reveals that DIS3L and DIS3L2 are critical 3' to 5' exonucleases that regulate miRNA stability, with the addition and removal of 3' end extensions controlling miRNA levels in the cell.

Indexed as

RNA Stability3' Untranslated RegionsAntineoplastic AgentsCell SurvivalDEAD-box RNA HelicasesDoxorubicinEtoposideExoribonucleasesFemaleGene Expression Regulation, NeoplasticHCT116 CellsHeLa CellsHumansMicroRNAsPolyadenylationRibonuclease III3' Untranslated RegionsAntineoplastic AgentsDEAD-box RNA HelicasesDICER1 protein, humanDIS3L2 protein, humanDIS3L protein, humanDoxorubicinEtoposideExoribonucleasesMicroRNAsRibonuclease IIIRibonucleasesRNA NucleotidyltransferasesTENT4B protein, humanTP53 protein, humanTumor Suppressor Protein p533′ end modificationcancerDIS3LDIS3L2dyskeratosis congenitamiRNAnon-coding RNA degradationp53PAPD5PARN

Identifiers

PMID30770239
PMCPMC6430647
OpenAlexW2914953187

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.