Evidence map›Paper›PMID 30769143›Full record

ArticleGene2019

Exploring the involvement of Tac2 in the mouse hippocampal stress response through gene networking.

Mike Hook, Fuyi Xu, Elena Terenina, Wenyuan Zhao, Athena Starlard-Davenport, Pierre Mormede, Byron C Jones, Megan K Mulligan, Lu Lu

Open access · greenAbstract read
In one paragraph

Article in Gene, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Mike HookDepartment of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN 38163, USA.
Fuyi XuDepartment of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN 38163, USA.
Elena TereninaDepartment of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN 38163, USA; GenPhySE, Université de Toulouse, INRA, INPT, ENVT, Castanet Tolosan 31320, France.
Wenyuan ZhaoDepartment of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN 38163, USA.
Athena Starlard-DavenportDepartment of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN 38163, USA.
Pierre MormedeDepartment of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN 38163, USA; GenPhySE, Université de Toulouse, INRA, INPT, ENVT, Castanet Tolosan 31320, France.
Byron C JonesDepartment of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN 38163, USA.
Megan K MulliganDepartment of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN 38163, USA. Electronic address: mmulliga@uthsc.edu.
Lu LuDepartment of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN 38163, USA. Electronic address: lulu@uthsc.edu.
The University of Texas Health Science Center at Tyler · USGénétique Physiologie et Systèmes d'Elevage · FRUniversity of Tennessee Health Science Center · US

Funding

Genetic Analysis of Ethanol-Mediated Stress ReductionU01AA014425 · NIAAA · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI LU, LU · 2004 to 2008
$2.1M
Genetics of Chronic Mild Stress and Alcohol ConsumptionR01AA021951 · NIAAA · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI JONES, BYRON C, LU, LU · 2014 to 2017
$1.5M
NIAAA NIH HHS R01 AA021951NIAAA NIH HHS U01 AA014425
6 · The paper itself

Abstract

Tachykinin 2 (Tac2) is expressed in a number of areas throughout the brain, including the hippocampus. However, knowledge about its function has been only well explored in the hypothalamus in the context of reproductive health. In this study, we identified and validated increased hippocampal Tac2 mRNA expression in response to chronic mild stress in mice. Expression quantitative trait locus (eQTL) analysis showed Tac2 is cis-regulated in the hippocampus. Using a systems genetics approach, we constructed a Tac2 co-expression network to better understand the relationship between Tac2 and the hippocampal stress response. Our network identified 69 total genes associated with Tac2, several of which encode major neuropeptides involved in hippocampal stress signaling as well as critical genes for producing neural plasticity, indicating that Tac2 is involved in these processes. Pathway analysis for the member of Tac2 gene network revealed a strong connection between Tac2 and neuroactive ligand-receptor interaction, calcium signaling pathway, as well as cardiac muscle contraction. In addition, we also identified 46 stress-related phenotypes, specifically fear conditioning response, that were significantly correlated with Tac2 expression. Our results provide evidence for Tac2 as a strong candidate gene who likely plays a role in hippocampal stress processing and neural plasticity.

Indexed as

AnimalsConditioning, PsychologicalFearFemaleGene Expression RegulationGene Regulatory NetworksHippocampusMiceMice, Inbred C57BLModels, AnimalNeuronal PlasticityProtein PrecursorsRNA, MessengerStress, PsychologicalTachykininspreprotachykininProtein PrecursorsRNA, MessengerTachykininsChronic stressFear learningGene co-expression networkGeneticsGenomicsHippocampusQTL analysisSynaptic plasticity

Identifiers

PMID30769143
PMCPMC6754182
OpenAlexW2911850872

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.