Evidence map›Paper›PMID 30769005›Full record

ArticleJournal of hepatology2019

ERAP1 allotypes shape the epitope repertoire of virus-specific CD8

Janine Kemming, Emma Reeves, Katja Nitschke, Vanessa Widmeier, Florian Emmerich, Tobias Hermle, Emma Gostick, Andreas Walker, Jörg Timm, David A Price and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of hepatology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Biology of HLA class I associated inflammatory diseases.Best practice & research. Clinical rheumatology · 2024
    Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Adaptive Immune Response against Hepatitis C Virus.International journal of molecular sciences · 2020
    Review
  13. Review
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Janine KemmingDepartment of Medicine II, University Medical Center Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany; Faculty of Biology, University of Freiburg, Freiburg, Germany.
Emma ReevesCentre for Cancer Immunology, Faculty of Medicine, University of Southampton, University Hospital Southampton, Southampton, United Kingdom.
Katja NitschkeDepartment of Medicine II, University Medical Center Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Vanessa WidmeierDepartment of Medicine II, University Medical Center Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Florian EmmerichInstitute of Transfusion Medicine and Gene Therapy, University Hospital Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Tobias HermleRenal Division, University Medical Center Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Emma GostickDivision of Infection and Immunity, Cardiff University School of Medicine, Cardiff, United Kingdom.
Andreas WalkerInstitute for Virology, Heinrich Heine University, Düsseldorf, Germany.
Jörg TimmInstitute for Virology, Heinrich Heine University, Düsseldorf, Germany.
David A PriceDivision of Infection and Immunity, Cardiff University School of Medicine, Cardiff, United Kingdom.
Maike HofmannDepartment of Medicine II, University Medical Center Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Robert ThimmeDepartment of Medicine II, University Medical Center Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Edward JamesCentre for Cancer Immunology, Faculty of Medicine, University of Southampton, University Hospital Southampton, Southampton, United Kingdom.
Christoph Neumann-HaefelinDepartment of Medicine II, University Medical Center Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany. Electronic address: christoph.neumann-haefelin@uniklinik-freiburg.de.
University of Freiburg · DECardiff University · GBHeinrich Heine University Düsseldorf · DEUniversity Hospital Southampton NHS Foundation Trust · GB

Funding

Cancer Research UKWellcome Trust 100326/Z/12/Z
6 · The paper itself

Abstract

BACKGROUND &

aimsEndoplasmic reticulum aminopeptidase 1 (ERAP1) polymorphisms are linked with human leukocyte antigen (HLA) class I-associated autoinflammatory disorders, including ankylosing spondylitis and Behçet's disease. Disease-associated ERAP1 allotypes exhibit distinct functional properties, but it remains unclear how differential peptide trimming in vivo affects the repertoire of epitopes presented to CD8

methodsWe performed genetic and functional analyses of ERAP1 allotypes and characterized the HCV-specific CD8

resultsTwo hypoactive allotypic variants of ERAP1 were identified in an individual with acute HCV infection. The associated repertoire of virus-derived epitopes recognized by CD8

conclusionsERAP1 allotypes modify the virus-specific CD8 LAY SUMMARY: Endoplasmic reticulum aminopeptidase 1 (ERAP1) plays a key role in antigen presentation. Genetic variants of ERAP1 (leading to distinct allotypes) are linked with specific autoinflammatory disorders, such as ankylosing spondylitis and Behçet's disease. We found that ERAP1 allotypes modified the repertoire of virus-specific CD8

Indexed as

Acute DiseaseAminopeptidasesCD8-Positive T-LymphocytesEpitopes, T-LymphocyteHepacivirusHepatitis CHumansMinor Histocompatibility AntigensAminopeptidasesEpitopes, T-LymphocyteERAP1 protein, humanMinor Histocompatibility AntigensEpitope repertoireERAP1Hepatitis C virusHLA-B*27T cells

Identifiers

PMID30769005
PMCPMC6527866
OpenAlexW2911331761

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.