Evidence map›Paper›PMID 30767554›Full record

ArticleBiomarkers in medicine2019

Pancreatic cancer biomarker detection by two support vector strategies for recursive feature elimination.

Yan Wang, Keke Liu, Qin Ma, Yongfei Tan, Wei Du, Yidan Lv, Yuan Tian, Hao Wang

Open access · greenAbstract read
In one paragraph

Article in Biomarkers in medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. PredAmyl-MLP: Prediction of Amyloid Proteins Using Multilayer Perceptron.Computational and mathematical methods in medicine · 2020
    Article
  10. Prediction of Anticancer Peptides Using a Low-Dimensional Feature Model.Frontiers in bioengineering and biotechnology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Yan WangKey Laboratory of Symbol Computation & Knowledge Engineering of Ministry of Education, College of Computer Science & Technology, Jilin University, Changchun 130012, PR China.
Keke LiuKey Laboratory of Symbol Computation & Knowledge Engineering of Ministry of Education, College of Computer Science & Technology, Jilin University, Changchun 130012, PR China.
Qin MaDepartment of Biomedical Informatics, College of Medicine, The Ohio State University, Columbus, OH 43210, USA.
Yongfei TanBasic Medicine School, Jilin University, Changchun 130021, PR China.
Wei DuKey Laboratory of Symbol Computation & Knowledge Engineering of Ministry of Education, College of Computer Science & Technology, Jilin University, Changchun 130012, PR China.
Yidan LvKey Laboratory of Symbol Computation & Knowledge Engineering of Ministry of Education, College of Computer Science & Technology, Jilin University, Changchun 130012, PR China.
Yuan TianKey Laboratory of Symbol Computation & Knowledge Engineering of Ministry of Education, College of Computer Science & Technology, Jilin University, Changchun 130012, PR China.
Hao WangDepartment of Hepatopancreatobiliary Surgery, Second Affiliated Hospital of Harbin Medical University, Harbin 150086, PR China.
Jilin University · CNChangchun University · CNSecond Affiliated Hospital of Harbin Medical University · CNThe Ohio State University · USUnion Hospital · CN

Funding

Construction of cell specific gene co-regulations signatures based on single cell transcriptomics analysisR01GM131399 · NIGMS · SOUTH DAKOTA STATE UNIVERSITY · PI MA, QIN · 2018 to 2021
$1.3M
NIGMS NIH HHS R01 GM131399
6 · The paper itself

Abstract

aimPancreatic cancer is one of the worst malignant tumors in prognosis. Therefore, to reduce the mortality rate of pancreatic cancer, early diagnosis and prompt treatment are particularly important.

resultsWe put forward a new feature-selection method that was used to find clinical markers for pancreatic cancer by combination of Support Vector Machine Recursive Feature Elimination (SVM-RFE) and Large Margin Distribution Machine Recursive Feature Elimination (LDM-RFE) algorithms. As a result, seven differentially expressed genes were predicted as specific biomarkers for pancreatic cancer because of their highest accuracy of classification on cancer and normal samples.

conclusionThree (MMP7, FOS and A2M) out of the seven predicted gene markers were found to encode proteins secreted into urine, providing potential diagnostic evidences for pancreatic cancer.

Indexed as

AlgorithmsGene Expression ProfilingSupport Vector Machinealpha-MacroglobulinsBiomarkers, TumorCase-Control StudiesHumansMatrix Metalloproteinase 7PancreasPancreatic NeoplasmsPrognosisProto-Oncogene Proteins c-fosSurvival RateA2M protein, humanalpha-MacroglobulinsBiomarkers, TumorFOS protein, humanMatrix Metalloproteinase 7MMP7 protein, humanProto-Oncogene Proteins c-fosbiomarker detectionLDM-RFEpancreatic cancerSVM-RFEurinary excretory protein

Identifiers

PMID30767554
PMCPMC6737501
OpenAlexW2914148690

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.