Evidence map›Paper›PMID 30765867›Full record

ArticleJournal of human genetics2019

Nonsense variants in STAG2 result in distinct sex-dependent phenotypes.

Hiromi Aoi, Ming Lei, Takeshi Mizuguchi, Nobuko Nishioka, Tomohide Goto, Sahoko Miyama, Toshifumi Suzuki, Kazuhiro Iwama, Yuri Uchiyama, Satomi Mitsuhashi and 3 more

RetractedAbstract readCase ReportsRetracted Publication
PubMed Publisher
In one paragraph

Article in Journal of human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. A recurrent PJA1 variant in trigonocephaly and neurodevelopmental disorders.Annals of clinical and translational neurology · 2020
    Article
  4. Article
  5. Article
  6. Review
  7. Cohesin complex-associated holoprosencephaly.Brain : a journal of neurology · 2019
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Hiromi AoiDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Japan.
Ming LeiDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Japan.
Takeshi MizuguchiDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Japan.
Nobuko NishiokaDepartment of Obstetrics and Gynecology, Koshigaya Municipal Hospital, Saitama, Japan.
Tomohide GotoDepartment of Neurology, Kanagawa Children's Medical Center, Kanagawa, Japan.
Sahoko MiyamaDepartment of Neurology, Tokyo Metropolitan Children's Medical Center, Fuchu, Tokyo, Japan.
Toshifumi SuzukiDepartment of Obstetrics and Gynecology, Faculty of Medicine, Juntendo University, Tokyo, Japan.ORCID http://orcid.org/0000-0003-0515-0481
Kazuhiro IwamaDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Japan.ORCID http://orcid.org/0000-0002-2584-9524
Yuri UchiyamaDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Japan.
Satomi MitsuhashiDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Japan.
Atsuo ItakuraDepartment of Obstetrics and Gynecology, Faculty of Medicine, Juntendo University, Tokyo, Japan.
Satoru TakedaDepartment of Obstetrics and Gynecology, Faculty of Medicine, Juntendo University, Tokyo, Japan.
Naomichi MatsumotoDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Japan. naomat@yokohama-cu.ac.jp.
Yokohama City University · JPJuntendo University · JPKanagawa Children's Medical Center · JPKoshigaya Municipal Hospital · JPTokyo Metropolitan Children's Medical Center · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We herein report two individuals with novel nonsense mutations in STAG2 on Xq25, encoding stromal antigen 2, a component of the cohesion complex. A male fetus (Case 1) clinically presented with holoprosencephaly, cleft palate and lip, blepharophimosis, nasal bone absence, and hypolastic left heart by ultrasonography at 15 gestational weeks. Another female patient (Case 2) showed a distinct phenotype with white matter hypoplasia, cleft palate, developmental delay (DD), and intellectual disability (ID) at 7 years. Whole-exome sequencing identified de novo nonsense mutations in STAG2: c.3097C>T, p.(Arg1033*) in Case 1 and c.2229G>A, p.(Trp743*) in Case 2. X-inactivation was highly skewed in Case 2. To date, only 10 STAG2 pathogenic variants (four nonsense, four missense, and two frameshift) have been reported in patients with multiple congenital anomalies, ID, and DD. Although Case 2 showed similar clinical features to the reported female patients with STAG2 abnormalities, Case 1 showed an extremely severe phenotype, which could be explained by the first detected truncating variant in males.

Indexed as

Codon, NonsenseMutation, MissenseAbnormalities, MultipleAntigens, NuclearCell Cycle ProteinsChildCohesinsFemaleHumansMaleSex FactorsAntigens, NuclearCell Cycle ProteinsCodon, NonsenseCohesinsSTAG2 protein, human

Identifiers

PMID30765867
OpenAlexW2914744717

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.