Evidence map›Paper›PMID 30763409›Full record

ArticlePloS one2019

Advances in geometric techniques for analyzing blebbing in chemotaxing Dictyostelium cells.

Zully Santiago, John Loustau, David Meretzky, Devarshi Rawal, Derrick Brazill

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Modeling the dynamics of actin and myosin during bleb stabilization.bioRxiv : the preprint server for biology · 2023
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Zully SantiagoDepartment of Biological Sciences, Hunter College and the PhD Program in Biology, Graduate Center, CUNY, New York, NY United States of America.
John LoustauDepartment of Mathematics and Statistics, Hunter College, CUNY, New York, NY, United States of America.
David MeretzkyDepartment of Mathematics and Statistics, Hunter College, CUNY, New York, NY, United States of America.
Devarshi RawalDepartment of Mathematics and Statistics, Hunter College, CUNY, New York, NY, United States of America.
Derrick BrazillDepartment of Biological Sciences, Hunter College and the PhD Programs in Biology and Biochemistry, Graduate Center, CUNY, New York, NY United States of America.ORCID 0000-0003-2652-6230
Hunter College · USThe Graduate Center, CUNY · US

Funding

RISE Program Hunter College Option IIIR25GM060665 · NIGMS · HUNTER COLLEGE · PI ORTIZ, BENJAMIN D.,, SERRANO, PETER A · 2000 to 2022
$22.8M
Basic and Translational Research Center for Reducing Health DisparitiesG12MD007599 · NIMHD · HUNTER COLLEGE · PI ANGULO, JESUS A · 2012 to 2017
$14.6M
NIGMS NIH HHS R25 GM060665NIMHD NIH HHS G12 MD007599
6 · The paper itself

Abstract

We present a technical platform that allows us to monitor and measure cortex and membrane dynamics during bleb-based chemotaxis. Using D. discoideum cells expressing LifeAct-GFP and crawling under agarose containing RITC-dextran, we were able to simultaneously visualize the actin cortex and the cell membrane throughout bleb formation. Using these images, we then applied edge detect to generate points on the cell boundary with coordinates in a coordinate plane. Then we fitted these points to a curve with known x and y coordinate functions. The result was to parameterize the cell outline. With the parameterization, we demonstrate how to compute data for geometric features such as cell area, bleb area and edge curvature. This allows us to collect vital data for the analysis of blebbing.

Indexed as

Actin CytoskeletonCell MembraneChemotaxisDictyosteliumImage Processing, Computer-Assisted

Identifiers

PMID30763409
PMCPMC6375592
OpenAlexW2949879651

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.