ArticlePloS one2019
In-silico study of biotic and abiotic stress-related transcription factor binding sites in the promoter regions of rice germin-like protein genes.
Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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30 citing papers in PubMed, 74 citations in OpenAlex.
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- Elucidating the role of brassinosteroid signaling genes and their promoters in Arabidopsis revealed regulatory mechanisms in plant development and responses to different abiotic stresses.BMC plant biology · 2025Article
- A Comprehensive Review of Experimental Models of Stress: Pragmatic Insight Into Psychoneuroimmunology.Health care science · 2025Review
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- Comprehensive studies reveal physiological and genetic diversity in traditional rice cultivars for UV-B sensitivity.Scientific reports · 2024Article
- Transcription factor ZmDof22 enhances drought tolerance by regulating stomatal movement and antioxidant enzymes activities in maize (Zea mays L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Genomic Exploration: Unraveling the Intricacies of Indica RiceACS omega · 2024Article
- Functional characterization ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- Self-grafting-induced epigenetic changes leading to drought stress tolerance in tomato plants.DNA research : an international journal for rapid publication of reports on genes and genomes · 2023Article
- Rice WRKY13 TF protein binds to motifs in the promoter region to regulate downstream disease resistance-related genes.Functional & integrative genomics · 2023Article
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- Effects and Mechanism of Enhanced UV-B Radiation on the Flag Leaf Angle of Rice.International journal of molecular sciences · 2022Article
- Genome-Wide Identification, Characterization, and Expression Analysis Related to Low-Temperature Stress of theInternational journal of molecular sciences · 2022Article
- Genome‑wide identification of CAMTA gene family members in rice (Oryza sativa L.) and in silico study on their versatility in respect to gene expression and promoter structure.Functional & integrative genomics · 2022Article
- Comparative transcriptome analysis of two contrasting resistant and susceptible Aegilops tauschii accessions to wheat leaf rust (Puccinia triticina) using RNA-sequencing.Scientific reports · 2022Article
- Physio-biochemical responses and expressional profiling analysis of drought tolerant genes in new promising rice genotype.PloS one · 2022Article
- Pharmaceutical, food potential, and molecular data ofGenetic resources and crop evolution · 2022Review
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Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Germin-like proteins (GLPs) are involved in biotic and abiotic stress tolerance in different plant species. Rice (Oryza sativa L.) genome contains about 40 GLP family member proteins in nine chromosomes. Although some of the rice GLP (OsGLP) promoters have been studied through in silico analysis as well as experimentally, studies regarding the distribution pattern of the biotic and abiotic stress associated transcription factor binding sites (TFbs) in the promoter regions of OsGLP genes have not been attempted thoroughly. Several transcription factors (TFs) namely NAC, WRKY, bHLH, bZIP, MYB and AP2/ERF act as major TFs concerned with biotic as well as abiotic stress responses across various plant species. In the present study the in silico analysis was carried out using the 1.5 kilobases (kb) promoter regions from 40 different OsGLP genes for the presence of NAC, WRKY, bHLH, bZIP, MYB and AP2/ERF TFbs in it. Among various OsGLP gene promoters, OsGLP8-11 was found to contain highest number of tested TFbs in the promoter region whereas the promoter region of OsGLP5-1 depicted least amount of TFbs. Phylogenetic study of promoter regions of different OsGLP genes revealed four different clades. Our analyses could reveal the evolutionary significance of different OsGLP gene promoters. It can be presumed from the present findings as well as previous reports that OsGLP gene duplications and subsequent variations in the TFbs in OsGLP gene promoter regions might be the consequences of neofunctionalization of OsGLP genes and their promoters for biotic and abiotic stress tolerance in rice.
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