Evidence map›Paper›PMID 30763317›Full record

ArticlePLoS genetics2019

Evolutionary rate covariation analysis of E-cadherin identifies Raskol as a regulator of cell adhesion and actin dynamics in Drosophila.

Qanber Raza, Jae Young Choi, Yang Li, Roisin M O'Dowd, Simon C Watkins, Maria Chikina, Yang Hong, Nathan L Clark, Adam V Kwiatkowski

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 45 citations in OpenAlex.

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  5. Correlated Gene Copy Number Changes in a Seminal Fluid Protein Network inbioRxiv : the preprint server for biology · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Qanber RazaDepartment of Cell Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.ORCID 0000-0001-7612-805X
Jae Young ChoiCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, New York, United States of America.ORCID 0000-0002-0238-8980
Yang LiDepartment of Cell Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.ORCID 0000-0001-5861-5313
Roisin M O'DowdDepartment of Cell Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.
Simon C WatkinsDepartment of Cell Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.
Maria ChikinaDepartment of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.
Yang HongDepartment of Cell Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.
Nathan L ClarkDepartment of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.
Adam V KwiatkowskiDepartment of Cell Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.ORCID 0000-0003-3997-7057
University of Pittsburgh · USNew York University · US

Funding

Title: Functional Annotation of Genomes via Phenotypic Convergence within Large Multi-species AlignmentsR01HG009299 · NHGRI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Maria D Chikina, Nathaniel L Clark · 2017 to 2026
$4.1M
Alpha-catenin function in cardiomyocyte adhesion and cytoskeletal organizationR01HL127711 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KWIATKOWSKI, ADAM VINCENT · 2016 to 2024
$3.5M
Plasma Membrane Targeting and Retargeting of Polarity ProteinsR01GM121534 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HONG, YANG · 2017 to 2025
$2.5M
Regulation of Adherens Junction Trafficking by Polarity ProteinsR01GM086423 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HONG, YANG · 2010 to 2014
$1.4M
Genomic Engineering in DrosophilaR21RR024869 · NCRR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HONG, YANG · 2009 to 2010
$394k
NCRR NIH HHS R21 RR024869NHGRI NIH HHS R01 HG009299NHLBI NIH HHS R01 HL127711NIGMS NIH HHS R01 GM086423NIGMS NIH HHS R01 GM121534
6 · The paper itself

Abstract

The adherens junction couples the actin cytoskeletons of neighboring cells to provide the foundation for multicellular organization. The core of the adherens junction is the cadherin-catenin complex that arose early in the evolution of multicellularity to link actin to intercellular adhesions. Over time, evolutionary pressures have shaped the signaling and mechanical functions of the adherens junction to meet specific developmental and physiological demands. Evolutionary rate covariation (ERC) identifies proteins with correlated fluctuations in evolutionary rate that can reflect shared selective pressures and functions. Here we use ERC to identify proteins with evolutionary histories similar to the Drosophila E-cadherin (DE-cad) ortholog. Core adherens junction components α-catenin and p120-catenin displayed positive ERC correlations with DE-cad, indicating that they evolved under similar selective pressures during evolution between Drosophila species. Further analysis of the DE-cad ERC profile revealed a collection of proteins not previously associated with DE-cad function or cadherin-mediated adhesion. We then analyzed the function of a subset of ERC-identified candidates by RNAi during border cell (BC) migration and identified novel genes that function to regulate DE-cad. Among these, we found that the gene CG42684, which encodes a putative GTPase activating protein (GAP), regulates BC migration and adhesion. We named CG42684 raskol ("to split" in Russian) and show that it regulates DE-cad levels and actin protrusions in BCs. We propose that Raskol functions with DE-cad to restrict Ras/Rho signaling and help guide BC migration. Our results demonstrate that a coordinated selective pressure has shaped the adherens junction and this can be leveraged to identify novel components of the complexes and signaling pathways that regulate cadherin-mediated adhesion.

Indexed as

Actin CytoskeletonActinsAdherens JunctionsAnimalsCadherinsCell AdhesionCell MembraneCell MovementCircadian Rhythm Signaling Peptides and ProteinsDrosophilaDrosophila ProteinsSignal TransductionActinsCadherinsCircadian Rhythm Signaling Peptides and ProteinsDrosophila ProteinsWake protein, Drosophila

Identifiers

PMID30763317
PMCPMC6375579
OpenAlexW2952255423

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.