Evidence map›Paper›PMID 30763309›Full record

ArticlePLoS computational biology2019

Identifying the mechanism for superdiffusivity in mouse fibroblast motility.

Giuseppe Passucci, Megan E Brasch, James H Henderson, Vasily Zaburdaev, M Lisa Manning

Abstract read
In one paragraph

Article in PLoS computational biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Random walk and cell morphology dynamics inFrontiers in cell and developmental biology · 2023
    Article
  6. Article
  7. Article
  8. Article
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  10. Crosshatch nanofiber networks of tunable interfiber spacing induce plasticity in cell migration and cytoskeletal response.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Giuseppe PassucciPhysics Department, Syracuse University, Syracuse, New York, United States of America.ORCID 0000-0001-5884-0166
Megan E BraschBiomedical and Chemical Engineering Department, Syracuse University, Syracuse, New York, United States of America.ORCID 0000-0002-3805-0543
James H HendersonBiomedical and Chemical Engineering Department, Syracuse University, Syracuse, New York, United States of America.ORCID 0000-0003-3355-5953
Vasily ZaburdaevInstitute of Supercomputing Technologies, Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia.ORCID 0000-0001-8234-3442
M Lisa ManningPhysics Department, Syracuse University, Syracuse, New York, United States of America.ORCID 0000-0001-7682-2324

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We seek to characterize the motility of mouse fibroblasts on 2D substrates. Utilizing automated tracking techniques, we find that cell trajectories are super-diffusive, where displacements scale faster than t1/2 in all directions. Two mechanisms have been proposed to explain such statistics in other cell types: run and tumble behavior with Lévy-distributed run times, and ensembles of cells with heterogeneous speed and rotational noise. We develop an automated toolkit that directly compares cell trajectories to the predictions of each model and demonstrate that ensemble-averaged quantities such as the mean-squared displacements and velocity autocorrelation functions are equally well-fit by either model. However, neither model correctly captures the short-timescale behavior quantified by the displacement probability distribution or the turning angle distribution. We develop a hybrid model that includes both run and tumble behavior and heterogeneous noise during the runs, which correctly matches the short-timescale behaviors and indicates that the run times are not Lévy distributed. The analysis tools developed here should be broadly useful for distinguishing between mechanisms for superdiffusivity in other cells types and environments.

Indexed as

AnimalsCell Culture TechniquesCell MovementComputational BiologyDiffusionFibroblastsMiceModels, BiologicalMovementProbability

Identifiers

PMID30763309
PMCPMC6392322

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.