Evidence map›Paper›PMID 30763066›Full record

ArticleACS chemical biology2019

An Autoinducer Analogue Reveals an Alternative Mode of Ligand Binding for the LasR Quorum-Sensing Receptor.

Jon E Paczkowski, Amelia R McCready, Jian-Ping Cong, Zhijie Li, Philip D Jeffrey, Chari D Smith, Brad R Henke, Frederick M Hughson, Bonnie L Bassler

Abstract read
In one paragraph

Article in ACS chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Silyl-Lipid FunctionalizedACS chemical biology · 2025
    Article
  8. Quorum Sensing and its Inhibition inCurrent drug targets · 2025
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. ModifiedFrontiers in molecular biosciences · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Jon E PaczkowskiDepartment of Molecular Biology , Princeton University , Princeton , New Jersey 08544 , United States.
Amelia R McCreadyDepartment of Molecular Biology , Princeton University , Princeton , New Jersey 08544 , United States.
Jian-Ping CongDepartment of Molecular Biology , Princeton University , Princeton , New Jersey 08544 , United States.
Zhijie LiDepartment of Molecular and Structural Biochemistry , North Carolina State University , Raleigh , North Carolina 27695 , United States.
Philip D JeffreyDepartment of Molecular Biology , Princeton University , Princeton , New Jersey 08544 , United States.
Chari D SmithDepartment of Molecular Biology , Princeton University , Princeton , New Jersey 08544 , United States.
Brad R HenkeOpti-Mol Consulting, LLC , Cary , North Carolina 27513 , United States.
Frederick M HughsonDepartment of Molecular Biology , Princeton University , Princeton , New Jersey 08544 , United States.
Bonnie L BasslerDepartment of Molecular Biology , Princeton University , Princeton , New Jersey 08544 , United States.ORCID 0000-0002-0043-746X
Princeton University · USHoward Hughes Medical Institute · USNorth Carolina State University · US

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007388 · NIGMS · PRINCETON UNIVERSITY · PI CRISTEA, ILEANA M. · 1985 to 2022
$27.4M
Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Intra-and Inter-Species Communication in BacteriaR01GM065859 · NIGMS · PRINCETON UNIVERSITY · PI BASSLER, BONNIE L · 2002 to 2015
$4.2M
Intra- and Inter- Species Communication in BacteriaR37GM065859 · NIGMS · PRINCETON UNIVERSITY · PI BASSLER, BONNIE L · 2016 to 2025
$3.4M
Manipulating Quorum Sensing to Control Bacterial PathogenicityR56AI091681 · NIAID · PRINCETON UNIVERSITY · PI HUGHSON, FREDERICK M · 2012 to 2012
$398k
Howard Hughes Medical InstituteNIAID NIH HHS R56 AI091681NIBIB NIH HHS P30 EB009998NIGMS NIH HHS R01 GM065859NIGMS NIH HHS R37 GM065859NIGMS NIH HHS T32 GM007388
6 · The paper itself

Abstract

Bacteria use a cell-cell communication process called quorum sensing to coordinate collective behaviors. Quorum sensing relies on production and group-wide detection of extracellular signal molecules called autoinducers. Here, we probe the activity of the Pseudomonas aeruginosa LasR quorum-sensing receptor using synthetic agonists based on the structure of the native homoserine lactone autoinducer. The synthetic compounds range from low to high potency, and agonist activity tracks with the ability of the agonist to stabilize the LasR protein. Structural analyses of the LasR ligand binding domain complexed with representative synthetic agonists reveal two modes of ligand binding, one mimicking the canonical autoinducer binding arrangement, and the other with the lactone head group rotated approximately 150°. Iterative mutagenesis combined with chemical synthesis reveals the amino acid residues and the chemical moieties, respectively, that are key to enabling each mode of binding. Simultaneous alteration of LasR residues Thr75, Tyr93, and Ala127 converts low-potency compounds into high-potency compounds and converts ligands that are nearly inactive into low-potency compounds. These results show that the LasR binding pocket displays significant flexibility in accommodating different ligands. The ability of LasR to bind ligands in different conformations, and in so doing, alter their potency as agonists, could explain the difficulties that have been encountered in the development of competitive LasR inhibitors.

Indexed as

4-ButyrolactoneAmino AcidsBacterial ProteinsEscherichia coliLigandsMolecular StructureMutationProtein BindingPseudomonas aeruginosaQuorum SensingSignal TransductionStructure-Activity RelationshipTrans-Activators4-ButyrolactoneAmino AcidsBacterial Proteinshomoserine lactoneLasR protein, Pseudomonas aeruginosaLigandsTrans-Activators

Identifiers

PMID30763066
PMCPMC6601336
OpenAlexW2912830173

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.