ArticlePlant reproduction2019
Gene expression atlas of embryo development in Arabidopsis.
Article in Plant reproduction, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
13 citing papers in PubMed.
- Farnesol and geranylgeraniol in plant reproduction: insights from Arabidopsis and beyond.Journal of experimental botany · 2026Review
- A spatio-temporal transcriptomic and proteomic dataset of developing Brassica napus seeds.Scientific data · 2025Article
- Article
- Spatiotemporal Transcriptomic Atlas of Developing Embryos and Vegetative Tissues in Flax.Plants (Basel, Switzerland) · 2022Article
- Transcriptome analysis reveals key developmental and metabolic regulatory aspects of oil palm (Elaeis guineensis Jacq.) during zygotic embryo development.BMC plant biology · 2022Article
- Weighted Gene Correlation Network Analysis (WGCNA) ofInternational journal of genomics · 2022Article
- Alternative splicing dynamics and evolutionary divergence during embryogenesis in wheat species.Plant biotechnology journal · 2021Article
- An Essential Function for Auxin in Embryo Development.Cold Spring Harbor perspectives in biology · 2021Review
- Developmental and genomic architecture of plant embryogenesis: from model plant to crops.Plant communications · 2021Review
- Integrative Modeling of Gene Expression and Metabolic Networks ofFrontiers in plant science · 2021Article
- Epigenetic Regulation of Auxin-Induced Somatic Embryogenesis in Plants.International journal of molecular sciences · 2020Review
- Laser-Assisted Microdissection of Plant Embryos for Transcriptional Profiling.Methods in molecular biology (Clifton, N.J.) · 2020Article
- Special issue: cellular omics methods in plant reproduction research.Plant reproduction · 2019Article
Corrections and comments
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Authors and funding
8 authors.
Funding
Abstract
Embryogenesis represents a critical phase in the life cycle of flowering plants. Here, we characterize transcriptome landscapes associated with key stages of embryogenesis by combining an optimized method for the isolation of developing Arabidopsis embryos with high-throughput RNA-seq. The resulting RNA-seq datasets identify distinct overlapping patterns of gene expression, as well as temporal shifts in gene activity across embryogenesis. Network analysis revealed stage-specific and multi-stage gene expression clusters and biological functions associated with key stages of embryo development. Methylation-related gene expression was associated with early- and middle-stage embryos, initiation of photosynthesis components with the late embryogenesis stage, and storage/energy-related protein activation with late and mature embryos. These results provide a comprehensive understanding of transcriptome programming in Arabidopsis embryogenesis and identify modules of gene expression corresponding to key stages of embryo development. This dataset and analysis are a unique resource to advance functional genetic analysis of embryo development in plants.
Indexed as
Identifiers
30762127What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.