Evidence map›Paper›PMID 30761387›Full record

ArticleJCO precision oncology2018

Impact of the SPOP Mutant Subtype on the Interpretation of Clinical Parameters in Prostate Cancer.

Deli Liu, Mandeep Takhar, Mohammed Alshalalfa, Nicholas Erho, Jonathan Shoag, Robert B Jenkins, R Jeffrey Karnes, Ashley E Ross, Edward M Schaeffer, Mark A Rubin and 8 more

Open access · hybridAbstract read
In one paragraph

Article in JCO precision oncology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Observational
  4. Article
  5. Article
  6. Article
  7. Race and prostate cancer: genomic landscape.Nature reviews. Urology · 2022
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Review
  19. Review
  20. SPOP and cancer: a systematic review.American journal of cancer research · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 1 institution in 1 country.

Deli LiuWeill Cornell Medicine.
Mandeep TakharGenomeDx Bioscience, Vancouver, British Columbia, Canada.
Mohammed AlshalalfaGenomeDx Bioscience, Vancouver, British Columbia, Canada.
Nicholas ErhoGenomeDx Bioscience, Vancouver, British Columbia, Canada.
Jonathan ShoagWeill Cornell Medicine.
Robert B JenkinsMayo Clinic, Rochester, MN.
R Jeffrey KarnesMayo Clinic, Rochester, MN.
Ashley E RossTexas Oncology, Dallas, TX.
Edward M SchaefferNorthwestern University, Chicago, IL.
Mark A RubinWeill Cornell Medicine, NewYork-Presbyterian Hospital, New York, NY.
Bruce TrockJohns Hopkins, Baltimore, MD.
Eric A KleinCleveland Clinic, Cleveland, OH.
Robert B DenSidney Kimmel Medical College at Thomas Jefferson University, Philadelphia, PA.
Scott A TomlinsUniversity of Michigan, Ann Arbor, MI.
Daniel E SprattUniversity of Michigan, Ann Arbor, MI.
Elai DavicioniGenomeDx Bioscience, Vancouver, British Columbia, Canada.
Andrea SbonerWeill Cornell Medicine, NewYork-Presbyterian Hospital, New York, NY.
Christopher E BarbieriWeill Cornell Medicine, NewYork-Presbyterian Hospital, New York, NY.
NewYork–Presbyterian Hospital · US

Funding

VACCINIA PSA FOR ANDROGEN-MODULATED POST-SURGICAL RECURRENCE OF PROSTATE CANCERP50CA069568 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI COONEY, KATHLEEN A · 1995 to 2013
$31.3M
Weill Cornell Medicine (WCM) SPORE in Prostate CancerP50CA211024 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI GUDAS, LORRAINE J · 2017 to 2021
$10.9M
Coordinate Regulation of Oncogenic Signaling Pathways in SPOP Mutant Prostate CancerR37CA215040 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI BARBIERI, CHRISTOPHER E · 2018 to 2024
$2.6M
Genomic instability and DNA repair in a distinct molecular class of prostate cancK08CA187417 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI BARBIERI, CHRISTOPHER E · 2014 to 2018
$865k
NCI NIH HHS K08 CA187417NCI NIH HHS P50 CA069568NCI NIH HHS P50 CA211024NCI NIH HHS R37 CA215040
6 · The paper itself

Abstract

purposeMolecular characterization of prostate cancer, including The Cancer Genome Atlas, has revealed distinct subtypes with underlying genomic alterations. One of these core subtypes,

methodsWe have developed a novel gene expression signature, classifier (Subclass Predictor Based on Transcriptional Data), and decision tree to predict the

resultsThe subclass predictor based on transcriptional data model showed high sensitivity and specificity in multiple cohorts across both RNA sequencing and microarray gene expression platforms. We predicted approximately 8% to 9% of cases to be

conclusionUsing a novel gene expression model and a decision tree algorithm to define prostate cancer molecular subclasses, we found that the

Identifiers

PMID30761387
PMCPMC6370327
OpenAlexW2883457526

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.