Evidence map›Paper›PMID 30760744›Full record

ArticleScientific reports2019

Biosynthetic investigation of γ-lactones in Sextonia rubra wood using in situ TOF-SIMS MS/MS imaging to localize and characterize biosynthetic intermediates.

Tingting Fu, Emeline Houël, Nadine Amusant, David Touboul, Grégory Genta-Jouve, Serge Della-Negra, Gregory L Fisher, Alain Brunelle, Christophe Duplais

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Tingting FuInstitut de Chimie des Substances Naturelles, CNRS UPR 2301, Université Paris-Sud, Université Paris-Saclay, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France.ORCID 0000-0003-0050-9571
Emeline HouëlCNRS UMR8172 EcoFoG, AgroParisTech, CIRAD, INRA, Université des Antilles, Université de Guyane, 97300, Cayenne, France.
Nadine AmusantCIRAD UMR93 EcoFoG, AgroParisTech, CNRS, INRA, Université des Antilles, Université de Guyane, 97310, Kourou, France.
David TouboulInstitut de Chimie des Substances Naturelles, CNRS UPR 2301, Université Paris-Sud, Université Paris-Saclay, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France.
Grégory Genta-JouveUniversité Paris Descartes, UMR CNRS 8638 COMETE, 4 avenue de l'observatoire, 75006, Paris, France.ORCID 0000-0002-9239-4371
Serge Della-NegraInstitut de Physique Nucléaire, UMR8608, IN2P3-CNRS, Université Paris-Sud, Université Paris-Saclay, 91406, Orsay, France.ORCID 0000-0002-2116-3744
Gregory L FisherPhysical Electronics, Chanhassen, Minnesota, 55317, USA. gfisher@phi.com.ORCID 0000-0001-7517-0512
Alain BrunelleInstitut de Chimie des Substances Naturelles, CNRS UPR 2301, Université Paris-Sud, Université Paris-Saclay, Avenue de la Terrasse, 91198, Gif-sur-Yvette, France.ORCID 0000-0001-6526-6481
Christophe DuplaisCNRS UMR8172 EcoFoG, AgroParisTech, CIRAD, INRA, Université des Antilles, Université de Guyane, 97300, Cayenne, France. christophe.duplais@ecofog.gf.ORCID 0000-0003-0926-9885

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular analysis by parallel tandem mass spectrometry (MS/MS) imaging contributes to the in situ characterization of biosynthetic intermediates which is crucial for deciphering the metabolic pathways in living organisms. We report the first use of TOF-SIMS MS/MS imaging for the cellular localization and characterization of biosynthetic intermediates of bioactive γ-lactones rubrynolide and rubrenolide in the Amazonian tree Sextonia rubra (Lauraceae). Five γ-lactones, including previously reported rubrynolide and rubrenolide, were isolated using a conventional approach and their structural characterization and localization at a lateral resolution of ~400 nm was later achieved using TOF-SIMS MS/MS imaging analysis. 2D/3D MS imaging at subcellular level reveals that putative biosynthetic γ-lactones intermediates are localized in the same cell types (ray parenchyma cells and oil cells) as rubrynolide and rubrenolide. Consequently, a revised metabolic pathway of rubrynolide was proposed, which involves the reaction between 2-hydroxysuccinic acid and 3-oxotetradecanoic acid, contrary to previous studies suggesting a single polyketide precursor. Our results provide insights into plant metabolite production in wood tissues and, overall, demonstrate that combining high spatial resolution TOF-SIMS imaging and MS/MS structural characterization offers new opportunities for studying molecular and cellular biochemistry in plants.

Indexed as

Tandem Mass SpectrometryAcetalsAlkenesAlkynesLauraceaeWoodAcetalsAlkenesAlkynesrubrenoliderubrynolide

Identifiers

PMID30760744
PMCPMC6374367

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.