Evidence map›Paper›PMID 30760640›Full record

ArticlePlant physiology2019

Control of Cognate Sense mRNA Translation by cis-Natural Antisense RNAs.

Jules Deforges, Rodrigo S Reis, Philippe Jacquet, Shaoline Sheppard, Veerendra P Gadekar, Gene Hart-Smith, Andrea Tanzer, Ivo L Hofacker, Christian Iseli, Ioannis Xenarios and 1 more

Open access · bronzeAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Plant physiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it, 61 citations in OpenAlex.

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  17. Light-dependent signal transduction in the marine diatomProceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Jules DeforgesDepartment of Plant Molecular Biology, University of Lausanne, Biophore Building, CH-1015 Lausanne, Switzerland.
Rodrigo S ReisDepartment of Plant Molecular Biology, University of Lausanne, Biophore Building, CH-1015 Lausanne, Switzerland.ORCID 0000-0002-3673-014X
Philippe JacquetDepartment of Plant Molecular Biology, University of Lausanne, Biophore Building, CH-1015 Lausanne, Switzerland.
Shaoline SheppardDepartment of Plant Molecular Biology, University of Lausanne, Biophore Building, CH-1015 Lausanne, Switzerland.ORCID 0000-0001-8805-3358
Veerendra P GadekarInstitute of Theoretical Chemistry, University of Vienna, Wahringer Str 17, A-1090 Vienna, Austria.ORCID 0000-0003-3388-8547
Gene Hart-SmithSchool of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney NSW 2052, Australia.ORCID 0000-0003-3907-0367
Andrea TanzerInstitute of Theoretical Chemistry, University of Vienna, Wahringer Str 17, A-1090 Vienna, Austria.ORCID 0000-0003-2873-4236
Ivo L HofackerInstitute of Theoretical Chemistry, University of Vienna, Wahringer Str 17, A-1090 Vienna, Austria.ORCID 0000-0001-7132-0800
Christian IseliSwiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland.ORCID 0000-0002-2296-2863
Ioannis XenariosSwiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland.ORCID 0000-0002-3413-6841
Yves PoirierDepartment of Plant Molecular Biology, University of Lausanne, Biophore Building, CH-1015 Lausanne, Switzerland yves.poirier@unil.ch.ORCID 0000-0001-8660-294X
University of Lausanne · CHUniversity of Vienna · ATSIB Swiss Institute of Bioinformatics · CHUNSW Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cis-Natural Antisense Transcripts (cis-NATs), which overlap protein coding genes and are transcribed from the opposite DNA strand, constitute an important group of noncoding RNAs. Whereas several examples of cis-NATs regulating the expression of their cognate sense gene are known, most cis-NATs function by altering the steady-state level or structure of mRNA via changes in transcription, mRNA stability, or splicing, and very few cases involve the regulation of sense mRNA translation. This study was designed to systematically search for cis-NATs influencing cognate sense mRNA translation in Arabidopsis (

Indexed as

Protein BiosynthesisArabidopsisArabidopsis ProteinsDNA-Binding ProteinsGene Expression Regulation, PlantPlants, Genetically ModifiedReproducibility of ResultsRNA, AntisenseRNA, MessengerRNA, PlantSequence Analysis, RNATranscription FactorsArabidopsis ProteinsDNA-Binding ProteinsRNA, AntisenseRNA, MessengerRNA, PlantTranscription FactorsWRKY45 protein, Arabidopsis

Identifiers

PMID30760640
PMCPMC6501089
OpenAlexW2912227266

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.