Evidence map›Paper›PMID 30760484›Full record

ArticleDevelopment (Cambridge, England)2019

Generating intravital super-resolution movies with conventional microscopy reveals actin dynamics that construct pioneer axons.

Yide Zhang, Ev L Nichols, Abigail M Zellmer, Ian H Guldner, Cody Kankel, Siyuan Zhang, Scott S Howard, Cody J Smith

Open access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Imaging actin organisation and dynamics in 3D.Journal of cell science · 2024
    Article
  3. Article
  4. Review
  5. Pioneer Axons Utilize aThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
  6. Frontiers in cell and developmental biology · 2021
    Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yide ZhangDepartment of Electrical Engineering, University of Notre Dame, Notre Dame, IN 46556, USA.ORCID 0000-0002-9463-3970
Ev L NicholsDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA.
Abigail M ZellmerDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA.
Ian H GuldnerDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA.
Cody KankelCenter for Research Computing. University of Notre Dame, Notre Dame, IN 46556, USA.
Siyuan ZhangDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA.
Scott S HowardDepartment of Electrical Engineering, University of Notre Dame, Notre Dame, IN 46556, USA showard@nd.edu csmith67@nd.edu.ORCID 0000-0003-3246-6799
Cody J SmithDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA showard@nd.edu csmith67@nd.edu.ORCID 0000-0002-9831-1514
University of Notre Dame · US

Funding

Mechanisms of neuroinflammation in brain metastasis progressionR01CA222405 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI ZHANG, SIYUAN · 2018 to 2022
$2.2M
(PQD-3) Spatiotemporal Molecular Interrogation of Early Metastatic Evolution In SituR01CA194697 · NCI · UNIVERSITY OF NOTRE DAME · PI ZHANG, SIYUAN · 2015 to 2018
$1.4M
NCI NIH HHS R01 CA194697NCI NIH HHS R01 CA222405
6 · The paper itself

Abstract

Super-resolution microscopy is broadening our in-depth understanding of cellular structure. However, super-resolution approaches are limited, for numerous reasons, from utilization in longer-term intravital imaging. We devised a combinatorial imaging technique that combines deconvolution with stepwise optical saturation microscopy (DeSOS) to circumvent this issue and image cells in their native physiological environment. Other than a traditional confocal or two-photon microscope, this approach requires no additional hardware. Here, we provide an open-access application to obtain DeSOS images from conventional microscope images obtained at low excitation powers. We show that DeSOS can be used in time-lapse imaging to generate super-resolution movies in zebrafish. DeSOS was also validated in live mice. These movies uncover that actin structures dynamically remodel to produce a single pioneer axon in a 'top-down' scaffolding event. Further, we identify an F-actin population - stable base clusters - that orchestrate that scaffolding event. We then identify that activation of Rac1 in pioneer axons destabilizes stable base clusters and disrupts pioneer axon formation. The ease of acquisition and processing with this approach provides a universal technique for biologists to answer questions in living animals.

Indexed as

ActinsAnimalsAnimals, Genetically ModifiedAxonsImage Processing, Computer-AssistedLasersMiceMice, TransgenicMicroscopy, ConfocalMicroscopy, VideoNormal DistributionPhotonsSignal-To-Noise RatioZebrafishActinsDeSOSNeurodevelopmentSuper-resolution

Identifiers

PMID30760484
PMCPMC6432666
OpenAlexW2914688801

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.