ArticleBMC genomics2019
The plastid and mitochondrial genomes of Eucalyptus grandis.
Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.
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Who cites it
37 citing papers in PubMed, 59 citations in OpenAlex.
- Comprehensive Analysis of the Complete Mitochondrial Genomes ofInternational journal of molecular sciences · 2026Article
- The Complete Chloroplast Genome and the Phylogenetic Analysis ofInternational journal of molecular sciences · 2025Article
- Analyses of contiguous reference genomes of Amaranthus tuberculatus highlight the landscape of the sex-associated region and PEBP gene family diversity.BMC genomics · 2025Article
- Episodic and Ongoing Mechanisms Drive Plastid-Derived Nuclear DNA Evolution in Angiosperms.Genome biology and evolution · 2025Article
- Variation of and associations with the depth and evenness of sequencing coverage in archived plastid genomes.Scientific reports · 2025Article
- Variation of and associations with the depth and evenness of sequencing coverage in archived plastid genomes.Research square · 2025Article
- The Complete Chloroplast Genome and the Phylogenetic Analysis ofInternational journal of molecular sciences · 2025Article
- Comprehensive analysis of the multi-rings mitochondrial genome of Populus tomentosa.BMC genomics · 2025Article
- The complete mitochondrial genome and phylogenetic analysis ofFrontiers in plant science · 2025Article
- De Novo Hybrid Assembly Unveils Multi-Chromosomal Mitochondrial Genomes inInternational journal of molecular sciences · 2024Article
- Plastid DNA is a major source of nuclear genome complexity and of RNA genes in the orphan crop moringa.BMC plant biology · 2024Article
- Plasticity of repetitive sequences demonstrated by the complete mitochondrial genome ofFrontiers in plant science · 2024Article
- Mitochondrial genome insights into the spatio-temporal distribution and genetic diversity ofFrontiers in plant science · 2024Article
- Assembly and comparative analysis of the first complete mitochondrial genome of zicaitai (Frontiers in plant science · 2024Article
- Multichromosomal mitochondrial genome of Punica granatum: comparative evolutionary analysis and gene transformation from chloroplast genomes.BMC plant biology · 2023Article
- Characterization and phylogenetic analysis of the complete mitochondrial genome sequence of Photinia serratifolia.Scientific reports · 2023Article
- Article
- Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids.GigaScience · 2022Article
- Comparative Analysis of Whole Chloroplast Genomes of Three Common Species ofInternational journal of molecular sciences · 2022Article
- A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants.Genes · 2022Article
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
Abstract
backgroundLand plant organellar genomes have significant impact on metabolism and adaptation, and as such, accurate assembly and annotation of plant organellar genomes is an important tool in understanding the evolutionary history and interactions between these genomes. Intracellular DNA transfer is ongoing between the nuclear and organellar genomes, and can lead to significant genomic variation between, and within, species that impacts downstream analysis of genomes and transcriptomes.
resultsIn order to facilitate further studies of cytonuclear interactions in Eucalyptus, we report an updated annotation of the E. grandis plastid genome, and the second sequenced and annotated mitochondrial genome of the Myrtales, that of E. grandis. The 478,813 bp mitochondrial genome shows the conserved protein coding regions and gene order rearrangements typical of land plants. There have been widespread insertions of organellar DNA into the E. grandis nuclear genome, which span 141 annotated nuclear genes. Further, we identify predicted editing sites to allow for the discrimination of RNA-sequencing reads between nuclear and organellar gene copies, finding that nuclear copies of organellar genes are not expressed in E. grandis.
conclusionsThe implications of organellar DNA transfer to the nucleus are often ignored, despite the insight they can give into the ongoing evolution of plant genomes, and the problems they can cause in many applications of genomics. Future comparisons of the transcription and regulation of organellar genes between Eucalyptus genotypes may provide insight to the cytonuclear interactions that impact economically important traits in this widely grown lignocellulosic crop species.
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