Evidence map›Paper›PMID 30759397›Full record

ArticleCell reports2019

Diurnal Rhythms Spatially and Temporally Organize Autophagy.

Mikhail Ryzhikov, Anna Ehlers, Deborah Steinberg, Wenfang Xie, Eitan Oberlander, Samuel Brown, Petra E Gilmore, Reid R Townsend, William S Lane, Tamas Dolinay and 3 more

Abstract read
In one paragraph

Article in Cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Guideline
  2. Article
  3. Article
  4. Circadian Control of Protein Synthesis.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  5. Review
  6. Review
  7. Article
  8. Circadian rhythms in solid organ transplantation.The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation · 2024
    Review
  9. Circadian immunity from bench to bedside: a practical guide.The Journal of clinical investigation · 2024
    Review
  10. Review
  11. Frontiers in neuroscience · 2024
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Mitochondrial autophagy in the sleeping brain.Frontiers in cell and developmental biology · 2022
    Review
  18. Article
  19. Review
  20. Autophagy in liver diseases: A review.Molecular aspects of medicine · 2021
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Mikhail RyzhikovDivision of Pulmonary and Critical Care Medicine, Washington University School of Medicine, Campus Box 8052, 660 South Euclid Avenue, St. Louis, MO 63110, USA.
Anna EhlersDivision of Pulmonary and Critical Care Medicine, Washington University School of Medicine, Campus Box 8052, 660 South Euclid Avenue, St. Louis, MO 63110, USA.
Deborah SteinbergDivision of Pulmonary and Critical Care Medicine, Washington University School of Medicine, Campus Box 8052, 660 South Euclid Avenue, St. Louis, MO 63110, USA.
Wenfang XieDivision of Pulmonary and Critical Care Medicine, Washington University School of Medicine, Campus Box 8052, 660 South Euclid Avenue, St. Louis, MO 63110, USA; Department of Respiration, Integrated Hospital of Traditional Chinese Medicine, Southern Medical University, Guangzhou, Guangdong 510315, China.
Eitan OberlanderDivision of Pulmonary and Critical Care Medicine, Washington University School of Medicine, Campus Box 8052, 660 South Euclid Avenue, St. Louis, MO 63110, USA.
Samuel BrownDivision of Pulmonary and Critical Care Medicine, Washington University School of Medicine, Campus Box 8052, 660 South Euclid Avenue, St. Louis, MO 63110, USA.
Petra E GilmoreDivision of Endocrinology, Metabolism and Lipid Research, Washington University School of Medicine, Campus Box 8052, 660 South Euclid Avenue, St. Louis, MO 63110, USA.
Reid R TownsendDivision of Endocrinology, Metabolism and Lipid Research, Washington University School of Medicine, Campus Box 8052, 660 South Euclid Avenue, St. Louis, MO 63110, USA.
William S LaneHarvard University Mass Spectrometry & Proteomics Laboratory, Cambridge, MA 02138, USA.
Tamas DolinayDivision of Pulmonary and Critical Care Medicine, UCLA Medical Center, 2625 W. Alameda Avenue, Burbank, CA 91505, USA.
Kiichi NakahiraDepartment of Medicine, New York Presbyterian/Weill Cornell Medical Center, 555 E. 68 St., New York, NY 10065, USA.
Augustine M K ChoiDepartment of Medicine, New York Presbyterian/Weill Cornell Medical Center, 555 E. 68 St., New York, NY 10065, USA.
Jeffrey A HaspelDivision of Pulmonary and Critical Care Medicine, Washington University School of Medicine, Campus Box 8052, 660 South Euclid Avenue, St. Louis, MO 63110, USA. Electronic address: jhaspel@wustl.edu.

Funding

Respiratory Computational Discovery CoreP01HL114501 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI ELIAS, JACK A · 2013 to 2025
$24.9M
PRINCIPLES IN PULMONARY RESEARCHT32HL007317 · NHLBI · WASHINGTON UNIVERSITY · PI Steven Brody, Michael J Holtzman · 1985 to 2026
$16.1M
Clock Gene Control of Viral Infection and AsthmaR01HL135846 · NHLBI · WASHINGTON UNIVERSITY · PI HASPEL, JEFFREY ADAM · 2017 to 2021
$2.8M
Novel role of RIPK3-dependent necroptosis pathway in lung and kidney fibrosisR01HL133801 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHOI, AUGUSTINE M, CHOI, MARY E · 2017 to 2020
$2.1M
Role of Macroautophagy and Circadian Clock Disruption in Sepsis PathogenesisK08GM102694 · NIGMS · WASHINGTON UNIVERSITY · PI HASPEL, JEFFREY ADAM · 2012 to 2015
$802k
NHLBI NIH HHS P01 HL114501NHLBI NIH HHS R01 HL133801NHLBI NIH HHS R01 HL135846NHLBI NIH HHS T32 HL007317NIGMS NIH HHS K08 GM102694
6 · The paper itself

Abstract

Circadian rhythms are a hallmark of physiology, but how such daily rhythms organize cellular catabolism is poorly understood. Here, we used proteomics to map daily oscillations in autophagic flux in mouse liver and related these rhythms to proteasome activity. We also explored how systemic inflammation affects the temporal structure of autophagy. Our data identified a globally harmonized rhythm for basal macroautophagy, chaperone-mediated autophagy, and proteasomal activity, which concentrates liver proteolysis during the daytime. Basal autophagy rhythms could be resolved into two antiphase clusters that were distinguished by the subcellular location of targeted proteins. Inflammation induced by lipopolysaccharide reprogrammed autophagic flux away from a temporal pattern that favors cytosolic targets and toward the turnover of mitochondrial targets. Our data detail how daily biological rhythms connect the temporal, spatial, and metabolic aspects of protein catabolism.

Indexed as

AutophagyCircadian RhythmHumansProteomicsautophagychaperone-mediated autophagycircadian rhythmclockendotoxininflammationlipopolysaccharidemacroautophagyproteasome

Identifiers

PMID30759397
PMCPMC6442472

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.