Evidence map›Paper›PMID 30759226›Full record

ArticleNucleic acids research2019

Understanding the role of intermolecular interactions between lissoclimides and the eukaryotic ribosome.

Simone Pellegrino, Mélanie Meyer, Zef A Könst, Mikael Holm, Vamsee K Voora, Daniya Kashinskaya, Camila Zanette, David L Mobley, Gulnara Yusupova, Chris D Vanderwal and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

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  7. Structure of the translatingProceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Simone PellegrinoInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), INSERM U964, CNRS UMR7104, Université de Strasbourg, 67404 Illkirch, France.
Mélanie MeyerInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), INSERM U964, CNRS UMR7104, Université de Strasbourg, 67404 Illkirch, France.
Zef A KönstDepartment of Chemistry, University of California, 1102 Natural Sciences II, Irvine, CA 92697-2025, USA.
Mikael HolmDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.
Vamsee K VooraDepartment of Chemistry, University of California, 1102 Natural Sciences II, Irvine, CA 92697-2025, USA.
Daniya KashinskayaInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), INSERM U964, CNRS UMR7104, Université de Strasbourg, 67404 Illkirch, France.
Camila ZanetteDepartment of Pharmaceutical Sciences, University of California, Irvine, CA 91010-92697, USA.
David L MobleyDepartment of Pharmaceutical Sciences, University of California, Irvine, CA 91010-92697, USA.
Gulnara YusupovaInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), INSERM U964, CNRS UMR7104, Université de Strasbourg, 67404 Illkirch, France.
Chris D VanderwalDepartment of Chemistry, University of California, 1102 Natural Sciences II, Irvine, CA 92697-2025, USA.
Scott C BlanchardDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.
Marat YusupovInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), INSERM U964, CNRS UMR7104, Université de Strasbourg, 67404 Illkirch, France.
Centre National de la Recherche Scientifique · FRUniversity of California, Irvine · USCornell University · USMemorial Sloan Kettering Cancer Center · US

Funding

Imaging Protein Synthesis on the Ribosome using Single-Molecule FRETR01GM079238 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI BLANCHARD, SCOTT C · 2006 to 2023
$7.0M
Computational alchemy for molecular design and optimizationR01GM108889 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI MOBLEY, DAVID LOWELL · 2014 to 2022
$2.5M
Cyclization Cascades to Access Bioactive DiterpenoidsR01GM129264 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI VANDERWAL, CHRISTOPHER D · 2018 to 2021
$1.6M
Probing and Engineering of Iterative Polyketide SynthaseR01GM127728 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI TSAI, SHIOU-CHUAN, VANDERWAL, CHRISTOPHER D · 2018 to 2021
$1.1M
NIGMS NIH HHS R01 GM079238NIGMS NIH HHS R01 GM108889NIGMS NIH HHS R01 GM129264
6 · The paper itself

Abstract

Natural products that target the eukaryotic ribosome are promising therapeutics to treat a variety of cancers. It is therefore essential to determine their molecular mechanism of action to fully understand their mode of interaction with the target and to inform the development of new synthetic compounds with improved potency and reduced cytotoxicity. Toward this goal, we have previously established a short synthesis pathway that grants access to multiple congeners of the lissoclimide family. Here we present the X-ray co-crystal structure at 3.1 Å resolution of C45, a potent congener with two A-ring chlorine-bearing stereogenic centers with 'unnatural' configurations, with the yeast 80S ribosome, intermolecular interaction energies of the C45/ribosome complex, and single-molecule FRET data quantifying the impact of C45 on both human and yeast ribosomes. Together, these data provide new insights into the role of unusual non-covalent halogen bonding interactions involved in the binding of this synthetic compound to the 80S ribosome.

Indexed as

Models, MolecularBiological ProductsCryoelectron MicroscopyCrystallography, X-RayDiterpenesEukaryotic CellsHumansProtein BindingRibosomesRNA, RibosomalSaccharomyces cerevisiaeSuccinimidesBiological ProductschlorolissoclimidedichlorolissoclimideDiterpeneshaterumaimide QRNA, RibosomalSuccinimides

Identifiers

PMID30759226
PMCPMC6451132
OpenAlexW2914869094

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.