Evidence map›Paper›PMID 30758084›Full record

ArticleJournal of clinical laboratory analysis2019

Intra- and inter-laboratory agreement of the FAM19A4/mir124-2 methylation test: Results from an international study.

Arno Floore, Albertus Hesselink, Anja Oštrbenk, Elia Alcaniz, Beate Rothe, Helle Pedersen, Montserrat Torres Hortal, Saskia Doorn, Wim Quint, Karl Ulrich Petry and 6 more

Open access · goldAbstract readMulticenter Study
In one paragraph

Article in Journal of clinical laboratory analysis, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 32 citations in OpenAlex.

  1. Observational
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  11. FAM19A4/miR124-2 Methylation Testing and Human Papillomavirus (HPV) 16/18 Genotyping in HPV-Positive Women Under the Age of 30 Years.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 8 institutions in 5 countries.

Arno FlooreSelf-screen B.V, Amsterdam, the Netherlands.
Albertus HesselinkSelf-screen B.V, Amsterdam, the Netherlands.
Anja OštrbenkInstitute of Microbiology and immunology, University of Ljubljana, Ljubljana, Slovenia.
Elia AlcanizHPV Research Group, Division of Pathology, University of Edinburgh, Edinburgh, Scotland.
Beate RotheInstitute for clinical chemistry, laboratory and transfusion medicine, Wolfsburg, Germany.
Helle PedersenMolecular Pathology Laboratory, Department of Pathology, Hvidovre Hospital, Hvidovre, Denmark.
Montserrat Torres HortalInfections and Cancer Laboratory, Catalan Institute of Oncology (ICO), Barcelona, Spain.
Saskia DoornSelf-screen B.V, Amsterdam, the Netherlands.
Wim QuintDDL Diagnostic Laboratory, Rijswijk, the Netherlands.
Karl Ulrich PetryInstitute for clinical chemistry, laboratory and transfusion medicine, Wolfsburg, Germany.
Mario PoljakInstitute of Microbiology and immunology, University of Ljubljana, Ljubljana, Slovenia.
Kate CuschieriHPV Research Group, Division of Pathology, University of Edinburgh, Edinburgh, Scotland.
Jesper BondeMolecular Pathology Laboratory, Department of Pathology, Hvidovre Hospital, Hvidovre, Denmark.
Silvia de SanjoséInfections and Cancer Laboratory, Catalan Institute of Oncology (ICO), Barcelona, Spain.
Maaike BleekerAmsterdam UMC, Vrije Universiteit Amsterdam, Pathology, Cancer Center Amsterdam, Amsterdam, the Netherlands.
Daniëlle HeidemanAmsterdam UMC, Vrije Universiteit Amsterdam, Pathology, Cancer Center Amsterdam, Amsterdam, the Netherlands.
ZF Screens (Netherlands) · NLHvidovre Hospital · DKUniversity of Edinburgh · GBUniversity of Ljubljana · SIVrije Universiteit Amsterdam · NLDDL Diagnostic Laboratory · NLInstitut Català d'Oncologia · ESInstitut Català d'Ornitologia · ES

Funding

Horizon 2020 Work Programme of the European Commission 666800
6 · The paper itself

Abstract

backgroundHPV-based cervical screening detects women at an increased risk of cervical cancer and precancer. To differentiate among HPV-positive women those with (pre)cancer, triage testing is necessary. The detection of cancer-associated host-cell DNA methylation (FAM19A4 and hsa-mir124-2) in cervical samples has shown valuable as triage test. This multicenter study from 6 collaborating European laboratories and one reference laboratory was set out to determine the intra- and inter-laboratory agreement of FAM19A4/mir124-2 DNA methylation analysis utilizing the QIAsure Methylation Test.

methodsAgreement analysis for the QIAsure Methylation Test was assessed on high-risk HPV-positive cervical specimens (n = 1680) both at the level of the assay and at the full workflow, including bisulfite conversion.

resultsIntra- and inter-laboratory assay agreement were 91.4% (534/584; 95% CI 88.9-93.5; κ = 0.82) and 92.5% (369/399; 95% CI 90.0-94.7; κ = 0.83), respectively. The inter-laboratory workflow (bisulfite conversion and assay combined) agreement was 90.0% (627/697; 95% CI 87.5%-92.0%; κ = 0.76).

conclusionThese data show that the QIAsure Methylation Test performs robust and reproducible in different laboratory contexts. These results support the use of the QIAsure Methylation Test for full molecular screening for cervical cancer, including primary HPV testing and triage testing by methylation analysis.

Indexed as

DNA MethylationCytokinesFemaleGenetic TechniquesHumansLaboratoriesMicroRNAsPapillomavirus InfectionsReproducibility of ResultsUterine Cervical NeoplasmsVaginal SmearsCytokinesMicroRNAsMIRN124 microRNA, humanTAFA4 protein, humancervical cancercervical intraepithelial neoplasiahost-cell DNA methylationHPVQIAsure methylation testreproducibilitytriage

Identifiers

PMID30758084
PMCPMC6528594
OpenAlexW2912944499

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.