Evidence map›Paper›PMID 30755602›Full record

ArticleNature communications2019

Biallelic mutations in valyl-tRNA synthetase gene VARS are associated with a progressive neurodevelopmental epileptic encephalopathy.

Jennifer Friedman, Desiree E Smith, Mahmoud Y Issa, Valentina Stanley, Rengang Wang, Marisa I Mendes, Meredith S Wright, Kristen Wigby, Amber Hildreth, John R Crawford and 19 more

2 registry-linked trialsOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 2 registered trials, which are not on this map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02917460 narecruitingnot on this map

Genomic Biorepository: Protocol for the Collection, Storage, Analysis, and Distribution of Biological Samples, Genomic and Clinical Data

TypeinterventionalSponsorRady Pediatric Genomics & Systems Medicine InstituteRan2016 to 2050Enrolled102,000ConditionsGenetic DiseasesArmsGenomic sequencing and molecular diagnostic results, if any
NCT03385876 naenrolling by invitationnot on this map

Rapid Whole Genome Sequencing (rWGS): Rapid Genomic Sequencing for Acutely Ill Patients and the Collection, Storage, Analysis, and Distribution of Biological Samples, Genomic and Clinical Data

TypeinterventionalSponsorRady Pediatric Genomics & Systems Medicine InstituteRan2017 to 2050Enrolled100,000ConditionsGenetic Diseases, Genetic SyndromeArmsGenomic sequencing and molecular diagnostic results, if any
3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
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  9. Review
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  11. Review
  12. Review
  13. High expression of VARS promotes the growth of multiple myeloma cells by causing imbalance in valine metabolism.Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2023
    Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Emerging cellular themes in leukodystrophies.Frontiers in cell and developmental biology · 2022
    Review
  19. Article
  20. Turkish journal of biology = Turk biyoloji dergisi · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 10 institutions in 7 countries.

Jennifer FriedmanDepartment of Neurosciences, University of California San Diego, La Jolla, CA, 92093, USA.
Desiree E SmithDepartment of Clinical Chemistry, Metabolic Unit, Amsterdam UMC (University Medical Centers), Vrije Universiteit Amsterdam, 1081 HV, Amsterdam, The Netherlands.
Mahmoud Y IssaDepartment of Clinical Genetics, National Research Centre, Cairo, 12311, Egypt.ORCID http://orcid.org/0000-0002-3899-2821
Valentina StanleyDepartment of Neurosciences, University of California San Diego, La Jolla, CA, 92093, USA.
Rengang WangDepartment of Neurosciences, University of California San Diego, La Jolla, CA, 92093, USA.
Marisa I MendesDepartment of Clinical Chemistry, Metabolic Unit, Amsterdam UMC (University Medical Centers), Vrije Universiteit Amsterdam, 1081 HV, Amsterdam, The Netherlands.
Meredith S WrightRady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, 92123, USA.
Kristen WigbyDepartment of Pediatrics, University of California San Diego, La Jolla, CA, 92093, USA.
Amber HildrethDepartment of Pediatrics, University of California San Diego, La Jolla, CA, 92093, USA.
John R CrawfordDepartment of Neurosciences, University of California San Diego, La Jolla, CA, 92093, USA.
Alanna E KoehlerDepartment of Neurosciences, Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0002-0148-7418
Shimul ChowdhuryRady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, 92123, USA.
Shareef NahasRady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, 92123, USA.
Liting ZhaiIAS HKUST-Scripps R&D Laboratory, Institute for Advanced Study, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, China.
Zhiwen XuIAS HKUST-Scripps R&D Laboratory, Institute for Advanced Study, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, China.
Wing-Sze LoIAS HKUST-Scripps R&D Laboratory, Institute for Advanced Study, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, China.
Kiely N JamesDepartment of Neurosciences, University of California San Diego, La Jolla, CA, 92093, USA.
Damir MusaevDepartment of Neurosciences, University of California San Diego, La Jolla, CA, 92093, USA.
Andrea AccogliDepartments of Neurology and Neurosurgery, Pediatrics and Human Genetics, McGill University, Montreal, H3A 0G4, Canada.
Kether GuerreroDepartments of Neurology and Neurosurgery, Pediatrics and Human Genetics, McGill University, Montreal, H3A 0G4, Canada.
Luan T TranDepartments of Neurology and Neurosurgery, Pediatrics and Human Genetics, McGill University, Montreal, H3A 0G4, Canada.
Tarek E I OmarDepartment of Pediatrics, Alexandria University, Alexandria, 21526, Egypt.
Tawfeg Ben-OmranClinical and Metabolic Genetics, Department of Pediatrics, Hamad Medical Corporation, 3050, Doha, Qatar.
David DimmockRady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, 92123, USA.
Stephen F KingsmoreRady Children's Institute for Genomic Medicine, Rady Children's Hospital, San Diego, CA, 92123, USA.
Gajja S SalomonsDepartment of Clinical Chemistry, Metabolic Unit, Amsterdam UMC (University Medical Centers), Vrije Universiteit Amsterdam, 1081 HV, Amsterdam, The Netherlands.
Maha S ZakiDepartment of Clinical Genetics, National Research Centre, Cairo, 12311, Egypt.
Geneviève BernardDepartments of Neurology and Neurosurgery, Pediatrics and Human Genetics, McGill University, Montreal, H3A 0G4, Canada.
Joseph G GleesonDepartment of Neurosciences, University of California San Diego, La Jolla, CA, 92093, USA. jogleeson@ucsd.edu.
Children’s Institute · USHoward Hughes Medical Institute · USAmsterdam Neuroscience · NLHong Kong University of Science and Technology · HKMontreal Children's Hospital · CANational Research Centre · EGAlexandria University · EGHamad Medical Corporation · QAIstituto Giannina Gaslini · ITUniversity of California San Diego · US

Funding

Joint Center for Mendelian GenomicsUM1HG008900 · NHGRI · BROAD INSTITUTE, INC. · PI O'DONNELL-LURIA, ANNE, REHM, HEIDI L · 2016 to 2020
$16.5M
Yale Center for Mendelian GenomicsUM1HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2016 to 2020
$14.8M
U of Calif, San Diego Neuroscience Microscopy ImagingP30NS047101 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLEESON, JOSEPH G, ZHENG, BINHAI · 2003 to 2022
$9.0M
Molecular Characterization of Pontocerebellar HypoplasiaR01NS098004 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JOSEPH G GLEESON · 2016 to 2026
$4.6M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysiS10OD018521 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2015 to 2015
$890k
NHGRI NIH HHS UM1 HG006504NHGRI NIH HHS UM1 HG008900NIH HHS S10 OD018521NINDS NIH HHS P30 NS047101NINDS NIH HHS R01 NS098004
6 · The paper itself

Abstract

Aminoacyl-tRNA synthetases (ARSs) function to transfer amino acids to cognate tRNA molecules, which are required for protein translation. To date, biallelic mutations in 31 ARS genes are known to cause recessive, early-onset severe multi-organ diseases. VARS encodes the only known valine cytoplasmic-localized aminoacyl-tRNA synthetase. Here, we report seven patients from five unrelated families with five different biallelic missense variants in VARS. Subjects present with a range of global developmental delay, epileptic encephalopathy and primary or progressive microcephaly. Longitudinal assessment demonstrates progressive cortical atrophy and white matter volume loss. Variants map to the VARS tRNA binding domain and adjacent to the anticodon domain, and disrupt highly conserved residues. Patient primary cells show intact VARS protein but reduced enzymatic activity, suggesting partial loss of function. The implication of VARS in pediatric neurodegeneration broadens the spectrum of human diseases due to mutations in tRNA synthetase genes.

Indexed as

MutationAllelesAnticodonChildChild, PreschoolDisease ProgressionEpilepsyExome SequencingFemaleGenetic Predisposition to DiseaseHumansLongitudinal StudiesLoss of Function MutationMaleMicrocephalyModels, MolecularAnticodonRNA, TransferValine-tRNA Ligase

Identifiers

PMID30755602
PMCPMC6372641
OpenAlexW2912502305

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.