Evidence map›Paper›PMID 30755177›Full record

ArticleBMC infectious diseases2019

Rapid molecular detection of macrolide resistance.

Megan M Nelson, Christopher L Waldron, John R Bracht

Open access · goldAbstract readValidation Study
In one paragraph

Article in BMC infectious diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Iranian journal of basic medical sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Megan M NelsonDepartment of Biology, American University, Washington, DC, 20016, USA.
Christopher L WaldronDepartment of Biology, American University, Washington, DC, 20016, USA.
John R BrachtDepartment of Biology, American University, Washington, DC, 20016, USA. jbracht@american.edu.ORCID http://orcid.org/0000-0001-8042-7685
American University · US

Funding

Model systems for the investigation of DNA methylation and drug repurposingK22CA184297 · NCI · AMERICAN UNIVERSITY · PI BRACHT, JOHN RUSSELL · 2014 to 2016
$457k
National Institutes of Health 1K22CA184297National Science Foundation 1656411NCI NIH HHS K22 CA184297
6 · The paper itself

Abstract

backgroundEmerging antimicrobial resistance is a significant threat to human health. However, methods for rapidly diagnosing antimicrobial resistance generally require multi-day culture-based assays. Macrolide efflux gene A, mef(A), provides resistance against erythromycin and azithromycin and is known to be laterally transferred among a wide range of bacterial species.

methodsWe use Recombinase Polymerase Assay (RPA) to detect the antimicrobial resistance gene mef(A) from raw lysates without nucleic acid purification. To validate these results we performed broth dilution assays to assess antimicrobial resistance to erythromycin and ampicillin (a negative control).

resultsWe validate the detection of mef(A) in raw lysates of Streptococcus pyogenes, S. pneumoniae, S. salivarius, and Enterococcus faecium bacterial lysates within 7-10 min of assay time. We show that detection of mef(A) accurately predicts real antimicrobial resistance assessed by traditional culture methods, and that the assay is robust to high levels of spiked-in non-specific nucleic acid contaminant. The assay was unaffected by single-nucleotide polymorphisms within divergent mef(A) gene sequences, strengthening its utility as a robust diagnostic tool.

conclusionsThis finding opens the door to implementation of rapid genomic diagnostics in a clinical setting, while providing researchers a rapid, cost-effective tool to track antibiotic resistance in both pathogens and commensal strains.

Indexed as

Genes, BacterialAnti-Bacterial AgentsAzithromycinDrug Resistance, BacterialErythromycinHumansMacrolidesMicrobial Sensitivity TestsStreptococcus pneumoniaeStreptococcus pyogenesAnti-Bacterial AgentsAzithromycinErythromycinMacrolidesAntimicrobial resistancePoint-of-care diagnosticsRecombinase polymerase assay

Identifiers

PMID30755177
PMCPMC6373131
OpenAlexW2941748606

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.