Evidence map›Paper›PMID 30753947›Full record

ArticleJournal of biomedical informatics2019

Confirm or refute?: A comparative study on citation sentiment classification in clinical research publications.

Halil Kilicoglu, Zeshan Peng, Shabnam Tafreshi, Tung Tran, Graciela Rosemblat, Jodi Schneider

Abstract readComparative Study
In one paragraph

Article in Journal of biomedical informatics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Machine Learning in Modeling of Mouse Behavior.Frontiers in neuroscience · 2021
    Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Halil KilicogluLister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894, United States. Electronic address: kilicogluh@mail.nih.gov.
Zeshan PengLister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894, United States.
Shabnam TafreshiDepartment of Computer Science, George Washington University, Washington, DC 20052, United States.
Tung TranDepartment of Computer Science, University of Kentucky, Lexington, KY 40506, United States.
Graciela RosemblatLister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894, United States.
Jodi SchneiderSchool of Information Sciences, University of Illinois, Champaign, IL 61820, United States.

Funding

Semantic Relation Extraction from Biomedical Text - Methods and ApplicationsZIALM010012 · NLM · NATIONAL LIBRARY OF MEDICINE · PI KILICOGLU, HACI · 2018 to 2019
$2.1M
Intramural NIH HHS Z99 LM999999
6 · The paper itself

Abstract

Quantifying scientific impact of researchers and journals relies largely on citation counts, despite the acknowledged limitations of this approach. The need for more suitable alternatives has prompted research into developing advanced metrics, such as h-index and Relative Citation Ratio (RCR), as well as better citation categorization schemes to capture the various functions that citations serve in a publication. One such scheme involves citation sentiment: whether a reference paper is cited positively (agreement with the findings of the reference paper), negatively (disagreement), or neutrally. The ability to classify citation function in this manner can be viewed as a first step toward a more fine-grained bibliometrics. In this study, we compared several approaches, varying in complexity, for classification of citation sentiment in clinical trial publications. Using a corpus of 285 discussion sections from as many publications (a total of 4,182 citations), we developed a rule-based method as well as supervised machine learning models based on support vector machines (SVM) and two variants of deep neural networks; namely, convolutional neural network (CNN) and bidirectional long short-term memory (BiLSTM). A CNN model augmented with hand-crafted features yielded the best performance (0.882 accuracy and 0.721 macro-F

Indexed as

Biomedical ResearchMachine LearningPublishingAlgorithmsCitation analysisNatural language processingNeural networksSentiment analysisSupervised machine learning

Identifiers

PMID30753947
PMCPMC7357398

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.