Evidence map›Paper›PMID 30753243›Full record

ArticlePloS one2019

Pathology and molecular epidemiology of Mycobacterium pinnipedii tuberculosis in native New Zealand marine mammals.

Wendi D Roe, Baukje Lenting, Anna Kokosinska, Stuart Hunter, Padraig J Duignan, Brett Gartrell, Lynn Rogers, Desmond M Collins, Geoffrey W de Lisle, Kristene Gedye and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Tuberculosis: An Ongoing Global Threat.Advances in experimental medicine and biology · 2026
    Review
  4. Pathogens (Basel, Switzerland) · 2025
    Review
  5. Article
  6. Pleural mesothelioma in a California sea lion (Zalophus californianus).The Journal of veterinary medical science · 2023
    Article
  7. Review
  8. Genomics insights into aFrontiers in microbiology · 2023
    Article
  9. Article
  10. Novel alphaherpesvirus in a wild South American sea lion (Otaria byronia) with pulmonary tuberculosis.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2021
    Article
  11. 'TB or not TB': the conundrum of pre-European contact tuberculosis in the Pacific.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Wendi D RoeSchool of Veterinary Science, Massey University, Palmerston North, New Zealand.ORCID 0000-0001-6832-5731
Baukje LentingSchool of Veterinary Science, Massey University, Palmerston North, New Zealand.
Anna KokosinskaSchool of Veterinary Science, Massey University, Palmerston North, New Zealand.
Stuart HunterSchool of Veterinary Science, Massey University, Palmerston North, New Zealand.
Padraig J DuignanThe Marine Mammal Centre, Sausalito, California, United States of America.
Brett GartrellSchool of Veterinary Science, Massey University, Palmerston North, New Zealand.
Lynn RogersSchool of Veterinary Science, Massey University, Palmerston North, New Zealand.
Desmond M CollinsAgResearch, Palmerston North, New Zealand.
Geoffrey W de LisleAgResearch, Palmerston North, New Zealand.
Kristene GedyeSchool of Veterinary Science, Massey University, Palmerston North, New Zealand.
Marian Price-CarterAgResearch, Palmerston North, New Zealand.
Massey University · NZAgResearch · NZMarine Mammal Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycobacterium pinnipedii causes tuberculosis in a number of pinniped species, and transmission to cattle and humans has been reported. The aims of this study were to: characterize the pathology and prevalence of tuberculosis in New Zealand marine mammals; use molecular diagnostic methods to confirm and type the causal agent; and to explore relationships between type and host characteristics. Tuberculosis was diagnosed in 30 pinnipeds and one cetacean. Most affected pinnipeds had involvement of the pulmonary system, supporting inhalation as the most common route of infection, although ingestion was a possible route in the cetacean. PCR for the RD2 gene confirmed M. pinnipedii as the causal agent in 23/31 (74%) cases (22 using DNA from cultured organisms, and one using DNA from formalin-fixed paraffin-embedded (FFPE) tissue), including the first published report in a cetacean. RD2 PCR results were compared for 22 cases where both cultured organisms and FFPE tissues were available, with successful identification of M. pinnipedii in 7/22 (31.8%). In cases with moderate to large numbers of acid-fast bacilli, RD2 PCR on FFPE tissue provided a rapid, inexpensive method for confirming M. pinnipedii infection without the need for culture. VNTR typing distinguished New Zealand M. pinnipedii isolates from M. pinnipedii isolated from Australian pinnipeds and from common types of M. bovis in New Zealand. Most (16/18) M. pinnipedii isolates from New Zealand sea lions were one of two common VNTR types whereas the cetacean isolate was a type detected previously in New Zealand cattle.

Indexed as

AnimalsCetaceaDNA, BacterialFemaleMaleMolecular EpidemiologyMycobacteriumMycobacterium InfectionsNew ZealandDNA, Bacterial

Identifiers

PMID30753243
PMCPMC6372207
OpenAlexW2912507881

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.