Evidence map›Paper›PMID 30747414›Full record

ArticleIn vitro cellular & developmental biology. Animal2019

Genetic algorithm as an optimization tool for the development of sponge cell culture media.

Stephanie Munroe, Kenneth Sandoval, Dirk E Martens, Detmer Sipkema, Shirley A Pomponi

Abstract read
In one paragraph

Article in In vitro cellular & developmental biology. Animal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Coating materials enhance urochordate primary cell culture adherence.In vitro cellular & developmental biology. Animal · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Advancing marine invertebrate cell line research: four key knowledge gaps.In vitro cellular & developmental biology. Animal · 2025
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. A review of algorithmic approaches for cell culture media optimization.Frontiers in bioengineering and biotechnology · 2023
    Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Stephanie MunroeBioprocess Engineering, Wageningen University & Research, Wageningen, Netherlands. stephanie.munroe@wur.nl.ORCID http://orcid.org/0000-0002-6780-7007
Kenneth SandovalBioprocess Engineering, Wageningen University & Research, Wageningen, Netherlands.
Dirk E MartensBioprocess Engineering, Wageningen University & Research, Wageningen, Netherlands.
Detmer SipkemaLaboratory of Microbiology, Wageningen University & Research, Wageningen, Netherlands.
Shirley A PomponiBioprocess Engineering, Wageningen University & Research, Wageningen, Netherlands.

Funding

FP7 People: Marie-Curie Actions ITN-2013-BluePharmTrain-607786Harbor Branch Oceanographic Institute Foundation Aquaculture Specialty License Program
6 · The paper itself

Abstract

Sponges are rich sources of novel natural products. Production in cell cultures may be an option for supply of these compounds but there are currently no sponge cell lines. Because there is a lack of understanding about the precise conditions and nutritional requirements that are necessary to sustain sponge cells in vitro, there has yet to be a defined, sponge-specific nutrient medium. This study utilized a genetic algorithm approach to optimize the amino acid composition of a commercially available basal cell culture medium in order to increase the metabolic activity of cells of the marine sponge Dysidea etheria. Four generations of the algorithm were carried out in vitro in wet lab conditions and an optimal medium combination was selected for further evaluation. When compared to the basal medium control, there was a twofold increase in metabolic activity. The genetic algorithm approach can be used to optimize other components of culture media to efficiently optimize chosen parameters without the need for detailed knowledge on all possible interactions.

Indexed as

AlgorithmsAmino AcidsAnimalsCell Culture TechniquesCulture MediaDysideaAmino AcidsCulture MediaCell cultureDysidea etheriaGenetic algorithmMedium optimizationMetabolic activitySponge

Identifiers

PMID30747414
PMCPMC6407725

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.