Evidence map›Paper›PMID 30747106›Full record

ArticleeLife2019

Extensive transmission of microbes along the gastrointestinal tract.

Thomas Sb Schmidt, Matthew R Hayward, Luis P Coelho, Simone S Li, Paul I Costea, Anita Y Voigt, Jakob Wirbel, Oleksandr M Maistrenko, Renato Jc Alves, Emma Bergsten and 7 more

Abstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 395 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
395citing papers in PubMed, 5 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

395 citing papers in PubMed, 5 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Trial
  7. Trial
  8. Trial
  9. Trial
  10. Trial
  11. Review
  12. Review
  13. Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. The redefined identity ofJournal of bacteriology · 2026
    Review
  19. Review
  20. Review

335 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Thomas Sb Schmidt *Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID 0000-0001-8587-4177
Matthew R Hayward *Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Luis P CoelhoStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID 0000-0002-9280-7885
Simone S LiStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID 0000-0002-0073-3656
Paul I CosteaStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Anita Y VoigtStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Jakob WirbelStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Oleksandr M MaistrenkoStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Renato Jc AlvesStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID 0000-0002-7212-0234
Emma BergstenDepartment of Gastroenterology and EA7375 -EC2M3, APHP and UPEC Université Paris-Est Créteil, Créteil, France.
Carine de BeaufortLuxembourg Centre for Systems Biomedicine, Luxembourg, Luxembourg.ORCID 0000-0003-4310-6799
Iradj SobhaniDepartment of Gastroenterology and EA7375 -EC2M3, APHP and UPEC Université Paris-Est Créteil, Créteil, France.
Anna Heintz-BuschartLuxembourg Centre for Systems Biomedicine, Luxembourg, Luxembourg.ORCID 0000-0002-9780-1933
Shinichi SunagawaStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Georg ZellerStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Paul WilmesLuxembourg Centre for Systems Biomedicine, Luxembourg, Luxembourg.ORCID 0000-0002-6478-2924
Peer BorkStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID 0000-0002-2627-833X

Funding

European Research Council 669830Fonds National de la Recherche Luxembourg CORE/15/BM/10404093German Network Bioinformatics de.NBI #031A537BGerman Network for Bioinformatics Infrastructure de.NBI #031A537BH2020 European Research Council ERC-AdG-669830H2020 Marie Skłodowska-Curie Actions 661019
6 · The paper itself

Abstract

The gastrointestinal tract is abundantly colonized by microbes, yet the translocation of oral species to the intestine is considered a rare aberrant event, and a hallmark of disease. By studying salivary and fecal microbial strain populations of 310 species in 470 individuals from five countries, we found that transmission to, and subsequent colonization of, the large intestine by oral microbes is common and extensive among healthy individuals. We found evidence for a vast majority of oral species to be transferable, with increased levels of transmission in colorectal cancer and rheumatoid arthritis patients and, more generally, for species described as opportunistic pathogens. This establishes the oral cavity as an endogenous reservoir for gut microbial strains, and oral-fecal transmission as an important process that shapes the gastrointestinal microbiome in health and disease.

Indexed as

MicrobiotaBacteriaCluster AnalysisFecesHumansIntestine, LargeMetagenomicsMouthSalivacolorectal cancercomputational biologygastrointestinal tracthumaninfectious diseasemetagenomicsmicrobiologymicrobiomerheumatoid arthritissystems biology

Identifiers

PMID30747106
PMCPMC6424576

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.