ArticleConservation physiology2019
FishResp: R package and GUI application for analysis of aquatic respirometry data.
Article in Conservation physiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Aerobic scope is sustained through a heatwave in juvenile Atlantic salmon (Salmo salar).Journal of fish biology · 2026Article
- Artificial light at night suppresses the metabolic response of a coral reef fish to a virtual predator.Conservation physiology · 2026Article
- Sirtuins may mediate temperature-induced metabolic remodeling in threespine stickleback.Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2025Article
- The physiological response of the Arctic key species Polar cod, Boreogadus saida, to hypoxia in a warming ocean: critical oxygen levels and swimming performance.BMC zoology · 2025Article
- Tissue-specific metabolic enzyme levels covary with whole-animal metabolic rates and life-history loci via epistatic effects.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024Article
- Capture and discard practises associated with an ornamental fishery affect the metabolic rate and aerobic capacity of three-striped dwarf cichlidsConservation physiology · 2024Article
- Estimating the magnitude and sensitivity of energy fluxes for stickleback hosts andEcology and evolution · 2023Article
- Thermal preference does not align with optimal temperature for aerobic scope in zebrafish (Danio rerio).The Journal of experimental biology · 2022Article
- Metabolic rate increases with acclimation temperature and is associated with mitochondrial function in some tissues of threespine stickleback.The Journal of experimental biology · 2022Article
- Aerobic scope is not maintained at low temperature and is associated with cardiac aerobic capacity in the three-spined stickleback Gasterosteus aculeatus.Journal of fish biology · 2022Article
- Genetic coupling of life-history and aerobic performance in Atlantic salmon.Proceedings. Biological sciences · 2022Article
- Standard metabolic rate does not associate with age-at-maturity genotype in juvenile Atlantic salmon.Ecology and evolution · 2022Article
- Guidelines for reporting methods to estimate metabolic rates by aquatic intermittent-flow respirometry.The Journal of experimental biology · 2021Article
- Does parental angling selection affect the behavior or metabolism of brown trout parr?Ecology and evolution · 2021Article
- Social Group Size and Shelter Availability Influence Individual Metabolic Traits in a Social Fish.Integrative organismal biology (Oxford, England) · 2021Article
- A Miniature Intermittent-Flow Respirometry System with a 3D-Printed, Palm-Sized Zebrafish Treadmill for Measuring Rest and Activity Metabolic Rates.Sensors (Basel, Switzerland) · 2020Article
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Intermittent-flow respirometry is widely used to measure oxygen uptake rates and subsequently estimate aerobic metabolic rates of aquatic animals. However, the lack of a standard quality-control software to detect technical problems represents a potential impediment to comparisons across studies in the field of evolutionary and conservation physiology. Here, we introduce 'FishResp', a versatile R package and its graphical implementation for quality-control and filtering of raw respirometry data. Our goal is to provide a straightforward, cross-platform and free software to help improve the quality and comparability of metabolic rate estimates for reducing methodological fragmentation in the field of aquatic respirometry. FishResp accepts data from various respirometry systems, allows users to detect potential mechanical problems which can occur during oxygen uptake measurements (e.g. chamber leaking, poor water circulation), and offers six options to correct raw data for microbial oxygen consumption. The software performs filtering of raw data based on user criteria, and produces accurate and unbiased estimates of absolute and mass-specific metabolic rates. Using data from three-spined sticklebacks (
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