Evidence map›Paper›PMID 30745422›Full record

ArticleJournal of medical genetics2019

Associations of CDH1 germline variant location and cancer phenotype in families with hereditary diffuse gastric cancer (HDGC).

Winifred Lo, Bin Zhu, Arvind Sabesan, Ho-Hsiang Wu, Astin Powers, Rebecca A Sorber, Sarangan Ravichandran, Ina Chen, Lucas A McDuffie, Humair S Quadri and 8 more

Open access · greenAbstract read
In one paragraph

Article in Journal of medical genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Association ofGastro hep advances · 2023
    Article
  12. Review
  13. Article
  14. GermlineCancers · 2021
    Article
  15. Review
  16. Genetic Gastric Cancer Risk Syndromes.Current treatment options in gastroenterology · 2020
    Article
  17. First report of a Mexican family with mutation in the CDH1 gene.Molecular genetics & genomic medicine · 2020
    Article
  18. Characteristics of cancer susceptibility genes mutations in 282 patients with gastric adenocarcinoma.Chinese journal of cancer research = Chung-kuo yen cheng yen chiu · 2020
    Article
  19. Family's History Based on theInternational journal of molecular sciences · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 1 country.

Winifred Lo *Thoracic and Surgical Oncology Branch, National Cancer Institute, Bethesda, Maryland, USA.
Bin Zhu *Biostatistics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institute of Health, Bethesda, Maryland, USA.
Arvind Sabesan *Thoracic and Surgical Oncology Branch, National Cancer Institute, Bethesda, Maryland, USA.
Ho-Hsiang WuBiostatistics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institute of Health, Bethesda, Maryland, USA.
Astin PowersLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, USA.
Rebecca A SorberThoracic and Surgical Oncology Branch, National Cancer Institute, Bethesda, Maryland, USA.
Sarangan RavichandranAdvanced Biomedical Computing Center, Frederick National Laboratory for Cancer Research, Frederick, Maryland, USA.
Ina ChenThoracic and Surgical Oncology Branch, National Cancer Institute, Bethesda, Maryland, USA.
Lucas A McDuffieThoracic and Surgical Oncology Branch, National Cancer Institute, Bethesda, Maryland, USA.
Humair S QuadriThoracic and Surgical Oncology Branch, National Cancer Institute, Bethesda, Maryland, USA.
Joal D BeaneThoracic and Surgical Oncology Branch, National Cancer Institute, Bethesda, Maryland, USA.
Kathleen CalzoneGenetics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, USA.
Markku M MiettinenLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, USA.
Stephen M HewittExperimental Pathology Laboratory, National Cancer Institute, Bethesda, Maryland, USA.
Christopher KohLiver Diseases Branch, National Institute of Diabetes and Digestive and Kidney Diseases, Bethesda, Maryland, USA.
Theo HellerLiver Diseases Branch, National Institute of Diabetes and Digestive and Kidney Diseases, Bethesda, Maryland, USA.
Sholom WacholderBiostatistics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institute of Health, Bethesda, Maryland, USA.
Udo RudloffThoracic and Surgical Oncology Branch, National Cancer Institute, Bethesda, Maryland, USA.
National Cancer Institute · USNational Institute of Diabetes and Digestive and Kidney Diseases · USFrederick National Laboratory for Cancer Research · USGeorgetown University · USWashington University in St. Louis · US

Funding

CCR NIH HHS HHSN261200800001CIntramural NIH HHS Z99 CA999999NCI NIH HHS HHSN261200800001E
6 · The paper itself

Abstract

introductionHereditary diffuse gastric cancer (HDGC) is a cancer syndrome associated with variants in E-cadherin (CDH1), diffuse gastric cancer and lobular breast cancer. There is considerable heterogeneity in its clinical manifestations. This study aimed to determine associations between CDH1 germline variant status and clinical phenotypes of HDGC.

methodsOne hundred and fifty-two HDGC families, including six previously unreported families, were identified. CDH1 gene-specific guidelines released by the Clinical Genome Resource (ClinGen) CDH1 Variant Curation Expert Panel were applied for pathogenicity classification of truncating, missense and splice site CDH1 germline variants. We evaluated ORs between location of truncating variants of CDH1 and incidence of colorectal cancer, breast cancer and cancer at young age (gastric cancer at <40 or breast cancer <50 years of age).

resultsFrequency of truncating germline CDH1 variants varied across functional domains of the E-cadherin receptor gene and was highest in linker (0.05785 counts/base pair; p=0.0111) and PRE regions (0.10000; p=0.0059). Families with truncating CDH1 germline variants located in the PRE-PRO region were six times more likely to have family members affected by colorectal cancer (OR 6.20, 95% CI 1.79 to 21.48; p=0.004) compared with germline variants in other regions. Variants in the intracellular E-cadherin region were protective for cancer at young age (OR 0.2, 95% CI 0.06 to 0.64; p=0.0071) and in the linker regions for breast cancer (OR 0.35, 95% CI 0.12 to 0.99; p=0.0493). Different CDH1 genotypes were associated with different intracellular signalling activation levels including different p-ERK, p-mTOR and β-catenin levels in early submucosal T1a lesions of HDGC families with different CDH1 variants.

conclusionType and location of CDH1 germline variants may help to identify families at increased risk for concomitant cancers that might benefit from individualised surveillance and intervention strategies.

Indexed as

Genetic Association StudiesGenetic Predisposition to DiseaseGerm-Line MutationPhenotypeAllelesAlternative SplicingAntigens, CDCadherinsExonsFamilyHumansImmunohistochemistryMutation, MissenseOdds RatioPedigreeSignal TransductionAntigens, CDCadherinsCDH1 protein, humancancer: gastricclinical genetics

Identifiers

PMID30745422
PMCPMC6716162
OpenAlexW2912115119

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.