Evidence map›Paper›PMID 30744354›Full record

ArticleAsian-Australasian journal of animal sciences2019

The effect of heat stress on frame switch splicing of X-box binding protein 1 gene in horse.

Hyo Gun Lee, Saichit Khummuang, Hyun-Hee Youn, Jeong-Woong Park, Jae-Young Choi, Teak-Soon Shin, Seong-Keun Cho, Byeong-Woo Kim, Jakyeom Seo, Myunghoo Kim and 2 more

Open access · goldAbstract read
In one paragraph

Article in Asian-Australasian journal of animal sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Work-Related Stress, Physio-Pathological Mechanisms, and the Influence of Environmental Genetic Factors.International journal of environmental research and public health · 2019
    Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Hyo Gun LeeDepartment of Animal Science, College of Natural Resources and Life Sciences, Pusan National University, Miryang 50463, Korea.
Saichit KhummuangDepartment of Animal Science, College of Natural Resources and Life Sciences, Pusan National University, Miryang 50463, Korea.
Hyun-Hee YounDepartment of Animal Science, College of Natural Resources and Life Sciences, Pusan National University, Miryang 50463, Korea.
Jeong-Woong ParkDepartment of Animal Science, College of Natural Resources and Life Sciences, Pusan National University, Miryang 50463, Korea.
Jae-Young ChoiDepartment of Animal Science, College of Natural Resources and Life Sciences, Pusan National University, Miryang 50463, Korea.
Teak-Soon ShinDepartment of Animal Science, College of Natural Resources and Life Sciences, Pusan National University, Miryang 50463, Korea.
Seong-Keun ChoDepartment of Animal Science, College of Natural Resources and Life Sciences, Pusan National University, Miryang 50463, Korea.
Byeong-Woo KimDepartment of Animal Science, College of Natural Resources and Life Sciences, Pusan National University, Miryang 50463, Korea.
Jakyeom SeoDepartment of Animal Science, College of Natural Resources and Life Sciences, Pusan National University, Miryang 50463, Korea.
Myunghoo KimDepartment of Animal Science, College of Natural Resources and Life Sciences, Pusan National University, Miryang 50463, Korea.
Tae Sub ParkGraduate School of International Agricultural Technology and Institute of Green-Bio Science and Technology, Seoul National University, Pyeongchang 25354, Korea.
Byung-Wook ChoDepartment of Animal Science, College of Natural Resources and Life Sciences, Pusan National University, Miryang 50463, Korea.
Pusan National University · KRSeoul National University of Science and Technology · KR

Funding

BioGreen 21 PJ01325701National Research Foundation of KoreaRural Development Administration 2017R1D1A1B03036432
6 · The paper itself

Abstract

objectiveAmong stress responses, the unfolded protein response (UPR) is a well-known mechanism related to endoplasmic reticulum (ER) stress. ER stress is induced by a variety of external and environmental factors such as starvation, ischemia, hypoxia, oxidative stress, and heat stress. Inositol requiring enzyme 1α (IRE1α)-X-box protein 1 (XBP1) is the most conserved pathway involved in the UPR and is the main component that mediates IRE1α signalling to downstream ER-associated degradation (ERAD)- or UPR-related genes. XBP1 is a transcription factor synthesised via a novel mechanism called 'frame switch splicing', and this process has not yet been studied in the horse XBP1 gene. Therefore, the aim of this study was to confirm the frame switch splicing of horse XBP1 and characterise its dynamics using Thoroughbred muscle cells exposed to heat stress.

methodsPrimary horse muscle cells were used to investigate heat stress-induced frame switch splicing of horse XBP1. Frame switch splicing was confirmed by sequencing analysis. XBP1 amino acid sequences and promoter sequences of various species were aligned to confirm the sequence homology and to find conserved cis-acting elements, respectively. The expression of the potential XBP1 downstream genes were analysed by quantitative real-time polymerase chain reaction.

resultsWe confirmed that splicing of horse XBP1 mRNA was affected by the duration of thermal stress. Twenty-six nucleotides in the mRNA of XBP1 were deleted after heat stress. The protein sequence and the cis-regulatory elements on the promoter of horse XBP1 are highly conserved among the mammals. Induction of putative downstream genes of horse XBP1 was dependent on the duration of heat stress. We confirmed that both the mechanisms of XBP1 frame switch splicing and various binding elements found in downstream gene promoters are highly evolutionarily conserved.

conclusionThe frame switch splicing of horse XBP1 and its dynamics were highly conserved among species. These results facilitate studies of ER-stress in horse.

Indexed as

Heat StressQuantitative Real-time Polymerase Chain Reaction (qRT-PCR)ThoroughbredX-box Binding Protein 1

Identifiers

PMID30744354
PMCPMC6599951
OpenAlexW2906965448

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.