Evidence map›Paper›PMID 30742804›Full record

ArticleBiochimica et biophysica acta. Biomembranes2019

Interaction of salt with ether- and ester-linked phospholipid bilayers.

Matthew Saunders, Mark Steele, Wyatt Lavigne, Sameer Varma, Sagar A Pandit

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta. Biomembranes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 55% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Matthew SaundersDepartment of Cell biology, Microbiology and Molecular Biology, University of South Florida, Tampa, FL 33620, United States of America. Electronic address: mwsaunders@mail.usf.edu.
Mark SteeleDepartment of Physics, University of South Florida, Tampa, FL 33620, United States of America.
Wyatt LavigneDepartment of Physics, University of South Florida, Tampa, FL 33620, United States of America.
Sameer VarmaDepartment of Cell biology, Microbiology and Molecular Biology, University of South Florida, Tampa, FL 33620, United States of America; Department of Physics, University of South Florida, Tampa, FL 33620, United States of America.
Sagar A PanditDepartment of Physics, University of South Florida, Tampa, FL 33620, United States of America. Electronic address: pandit@usf.edu.
University of South Florida · US

Funding

Accurate and Efficient Modeling of Biomolecular Ionic Interactions: Charge Redistribution, Polarization and DispersionR01GM118697 · NIGMS · UNIVERSITY OF SOUTH FLORIDA · PI VARMA, SAMEER · 2016 to 2019
$904k
NIGMS NIH HHS R01 GM118697
6 · The paper itself

Abstract

A distinguishing feature of Archaeal plasma membranes is that their phospholipids contain ether-links, as opposed to bacterial and eukaryotic plasma membranes where phospholipids primarily contain ester-links. Experiments show that this chemical difference in headgroup-tail linkage does produce distinct differences in model bilayer properties. Here we examine the effects of salt on bilayer structure in the case of an ether-linked lipid bilayer. We use molecular dynamics simulations and compare equilibrium properties of two model lipid bilayers in NaCl salt solution - POPC and its ether-linked analog that we refer to as HOPC. We make the following key observations. The headgroup region of HOPC "adsorbs" fewer ions compared to the headgroup region of POPC. Consistent with this, we note that the Debye screening length in the HOPC system is ∼ 10% shorter than that in the POPC system. Herein, we introduce a protocol to identify the lipid-water interfacial boundary that reproduces the bulk salt distribution consistent with Gouy-Chapman theory. We also note that the HOPC bilayer has excess solvent in the headgroup region when compared to POPC, coinciding with a trough in the electrostatic potential. Waters in this region have longer autocorrelation times and smaller lateral diffusion rates compared to the corresponding region in the POPC bilayer, suggesting that the waters in HOPC are more strongly coordinated to the lipid headgroups. Furthermore, we note that it is this region of tightly coordinated waters in the HOPC system that has a lower density of Na

Indexed as

EstersEthersLipid BilayersMolecular Dynamics SimulationMolecular StructurePhospholipidsSodium ChlorideWaterEstersEthersLipid BilayersPhospholipidsSodium ChlorideWaterEther lipidsGouy-Chapman theoryIonsLipid bilayersZwitterionic

Identifiers

PMID30742804
PMCPMC6598717
OpenAlexW2913107885

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.