Evidence map›Paper›PMID 30742016›Full record

ArticleThe ISME journal2019

Comparative cytology, physiology and transcriptomics of Burkholderia insecticola in symbiosis with the bean bug Riptortus pedestris and in culture.

Tsubasa Ohbayashi, Ryo Futahashi, Mia Terashima, Quentin Barrière, Florian Lamouche, Kazutaka Takeshita, Xian-Ying Meng, Yasuo Mitani, Teruo Sone, Shuji Shigenobu and 3 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The ISME journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed, 1 pooled it
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 1 synthesis or guideline pooled it, 94 citations in OpenAlex.

  1. InferiorMicrobial genomics · 2024
    Pooled it
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  16. The facultative intracellular symbiontFrontiers in microbiology · 2025
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  19. microRNA maintains nutrient homeostasis in the symbiont-host interaction.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Tsubasa OhbayashiInstitute for Integrative Biology of the Cell, UMR9198, CNRS, Université Paris-Sud, CEA, Gif-sur-Yvette, France.
Ryo FutahashiBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan.ORCID http://orcid.org/0000-0003-4791-7054
Mia TerashimaGraduate School of Agriculture, Hokkaido University, Sapporo, Japan.
Quentin BarrièreInstitute for Integrative Biology of the Cell, UMR9198, CNRS, Université Paris-Sud, CEA, Gif-sur-Yvette, France.
Florian LamoucheInstitute for Integrative Biology of the Cell, UMR9198, CNRS, Université Paris-Sud, CEA, Gif-sur-Yvette, France.
Kazutaka TakeshitaGraduate School of Agriculture, Hokkaido University, Sapporo, Japan.
Xian-Ying MengBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan.
Yasuo MitaniBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan.
Teruo SoneGraduate School of Agriculture, Hokkaido University, Sapporo, Japan.
Shuji ShigenobuNIBB Core Research Facilities, National Institute for Basic Biology, Okazaki, Japan.
Takema FukatsuBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan.ORCID http://orcid.org/0000-0001-5987-2602
Peter MergaertInstitute for Integrative Biology of the Cell, UMR9198, CNRS, Université Paris-Sud, CEA, Gif-sur-Yvette, France. peter.mergaert@i2bc.paris-saclay.fr.ORCID http://orcid.org/0000-0002-5919-7317
Yoshitomo KikuchiGraduate School of Agriculture, Hokkaido University, Sapporo, Japan. y-kikuchi@aist.go.jp.ORCID http://orcid.org/0000-0002-1651-2532
National Institute of Advanced Industrial Science and Technology · JPUniversité Paris-Sud · FRHokkaido University · JPNational Institute for Basic Biology · JPThe Open University of Japan · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the symbiosis of the bean bug Riptortus pedestris with Burkholderia insecticola, the bacteria occupy an exclusive niche in the insect midgut and favor insect development and reproduction. In order to understand how the symbiotic bacteria stably colonize the midgut crypts and which services they provide to the host, we compared the cytology, physiology, and transcriptomics of free-living and midgut-colonizing B. insecticola. The analyses revealed that midgut-colonizing bacteria were smaller in size and had lower DNA content, they had increased stress sensitivity, lost motility, and an altered cell surface. Transcriptomics revealed what kinds of nutrients are provided by the bean bug to the Burkholderia symbiont. Transporters and metabolic pathways of diverse sugars such as rhamnose and ribose, and sulfur compounds like sulfate and taurine were upregulated in the midgut-colonizing symbionts. Moreover, pathways enabling the assimilation of insect nitrogen wastes, i.e. allantoin and urea, were also upregulated. The data further suggested that the midgut-colonizing symbionts produced all essential amino acids and B vitamins, some of which are scarce in the soybean food of the host insect. Together, these findings suggest that the Burkholderia symbiont is fed with specific nutrients and also recycles host metabolic wastes in the insect gut, and in return, the bacterial symbiont provides the host with essential nutrients limited in the insect food, contributing to the rapid growth and enhanced reproduction of the bean bug host.

Indexed as

AnimalsBacterial ProteinsBurkholderiaCulture MediaGastrointestinal TractHeteropteraSymbiosisTranscriptomeBacterial ProteinsCulture Media

Identifiers

PMID30742016
PMCPMC6776119
OpenAlexW2913487685

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.