Evidence map›Paper›PMID 30741961›Full record

ArticleScientific reports2019

Particle Diffusometry: An Optical Detection Method for Vibrio cholerae Presence in Environmental Water Samples.

Katherine N Clayton, Taylor J Moehling, Dong Hoon Lee, Steven T Wereley, Jacqueline C Linnes, Tamara L Kinzer-Ursem

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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  7. Review of Rapid Diagnostic Methods forThe East African health research journal · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Katherine N ClaytonSchool of Mechanical Engineering, Purdue University, West Lafayette, IN, 47907, USA.
Taylor J MoehlingWeldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, 47907, USA.
Dong Hoon LeeSchool of Mechanical Engineering, Purdue University, West Lafayette, IN, 47907, USA.
Steven T WereleySchool of Mechanical Engineering, Purdue University, West Lafayette, IN, 47907, USA.
Jacqueline C LinnesWeldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, 47907, USA. jlinnes@purdue.edu.
Tamara L Kinzer-UrsemWeldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, 47907, USA. tursem@purdue.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

There is a need for a rapid, robust, and sensitive biosensor to identify low concentrations of pathogens in their native sample matrix without enrichment or purification. Nucleic acid-based detection methods are widely accepted as the gold standard in diagnostics, but robust detection of low concentrations of pathogens remains challenging. Amplified nucleic acids produce more viscous solutions, which can be measured by combining these products with fluorescent particles and measuring the change in the particle diffusion coefficient using a technique known as particle diffusometry. Here, we utilize Vibrio cholerae (V. cholerae) as a proof-of-concept for our detection system due to its inherently low concentration in environmental water samples. We demonstrate that particle diffusometry can be used to detect down to 1 V. cholerae cell in molecular-grade water in 20 minutes and 10 V. cholerae cells in pond water in just 35 minutes in 25 µL reaction volumes. The detection limit in pond water is environmentally relevant and does not require any enrichment or sample preparation steps. Particle diffusometry is 10-fold more sensitive than current gold standard fluorescence detection of nucleic acid amplification. Therefore, this novel measurement technique is a promising approach to detect low levels of pathogens in their native environments.

Indexed as

Biosensing TechniquesDiffusionFluorescenceMicrobiological TechniquesVibrio choleraeWater MicrobiologyNucleic Acid Amplification TechniquesParticle SizePolymerase Chain ReactionViscosity

Identifiers

PMID30741961
PMCPMC6370876

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.