ReviewPlant diversity2018
Plant phylogenomics based on genome-partitioning strategies: Progress and prospects.
Review in Plant diversity, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed.
- DNA barcodes analyses provide insights into species delineation and possible cryptic species in Amentotaxus (Taxaceae).BMC plant biology · 2026Article
- Applying Target Capture Sequencing to Unravel thePlants (Basel, Switzerland) · 2026Article
- Evaluating the utility of deep genome skimming for phylogenomic analyses: A case study in the species-rich genusPlant diversity · 2025Article
- Genetic Determination of a Cryptic Species in theEcology and evolution · 2024Article
- Skmer approach improves species discrimination in taxonomically problematic genusPlant diversity · 2024Article
- Relationships withinPlants (Basel, Switzerland) · 2024Article
- Review
- The first complete chloroplast genome ofFrontiers in plant science · 2024Article
- Plastome phylogenomics and morphological traits analyses provide new insights into the phylogenetic position, species delimitation and speciation of Triplostegia (Caprifoliaceae).BMC plant biology · 2023Article
- Phylogenetic Relationships and Next-Generation Barcodes in the GenusInternational journal of molecular sciences · 2023Article
- Phylogeny and Historical Biogeography of the East AsianInternational journal of molecular sciences · 2023Article
- Resolution, conflict and rate shifts: insights from a densely sampled plastome phylogeny for Rhododendron (Ericaceae).Annals of botany · 2022Article
- Repetitive Sequence Barcode Probe for Karyotype Analysis inInternational journal of molecular sciences · 2022Article
- Article
- Phylotranscriptomics of Theaceae: generic-level relationships, reticulation and whole-genome duplication.Annals of botany · 2022Article
- Spatiotemporal Evolution of the Global Species Diversity of Rhododendron.Molecular biology and evolution · 2022Article
- Testing the Complete Plastome for Species Discrimination, Cryptic Species Discovery and Phylogenetic Resolution inFrontiers in plant science · 2022Article
- Genome-partitioning strategy, plastid and nuclear phylogenomic discordance, and its evolutionary implications ofFrontiers in plant science · 2022Article
- Signal, bias, and the role of transcriptome assembly quality in phylogenomic inference.BMC ecology and evolution · 2021Article
- Development of genomic resources for the genusPlant diversity · 2021Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The rapid expansion of next-generation sequencing (NGS) has generated a powerful array of approaches to address fundamental questions in biology. Several genome-partitioning strategies to sequence selected subsets of the genome have emerged in the fields of phylogenomics and evolutionary genomics. In this review, we summarize the applications, advantages and limitations of four NGS-based genome-partitioning approaches in plant phylogenomics: genome skimming, transcriptome sequencing (RNA-seq), restriction site associated DNA sequencing (RAD-Seq), and targeted capture (Hyb-seq). Of these four genome-partitioning approaches, targeted capture (especially Hyb-seq) shows the greatest promise for plant phylogenetics over the next few years. This review will aid researchers in their selection of appropriate genome-partitioning approaches to address questions of evolutionary scale, where we anticipate continued development and expansion of whole-genome sequencing strategies in the fields of plant phylogenomics and evolutionary biology research.
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