Evidence map›Paper›PMID 30737391›Full record

ArticleNature communications2019

Light sheet microscopy with acoustic sample confinement.

Zhengyi Yang, Katy L H Cole, Yongqiang Qiu, Ildikó M L Somorjai, Philip Wijesinghe, Jonathan Nylk, Sandy Cochran, Gabriel C Spalding, David A Lyons, Kishan Dholakia

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Acoustic Tweezers for Microscopy of Living Organisms.IEEE transactions on bio-medical engineering · 2025
    Article
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  14. Article
  15. Acoustic Microfluidics.Annual review of analytical chemistry (Palo Alto, Calif.) · 2020
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Zhengyi YangSUPA, School of Physics and Astronomy, University of St Andrews, St Andrews, KY16 9SS, UK. zhengyiyang.phy@gmail.com.
Katy L H ColeCentre for Discovery Brain Sciences, MS Society Centre for Translational Research, Euan MacDonald Centre for Motor Neurone Disease Research, University of Edinburgh, Edinburgh, EH16 4SB, UK.
Yongqiang QiuSchool of Engineering, University of Glasgow, Glasgow, G12 8QQ, UK.ORCID http://orcid.org/0000-0003-0266-1294
Ildikó M L SomorjaiThe Scottish Oceans Institute, University of St Andrews, St Andrews, KY16 8LB, UK.ORCID http://orcid.org/0000-0001-5243-6664
Philip WijesingheSUPA, School of Physics and Astronomy, University of St Andrews, St Andrews, KY16 9SS, UK.ORCID http://orcid.org/0000-0002-8378-7261
Jonathan NylkSUPA, School of Physics and Astronomy, University of St Andrews, St Andrews, KY16 9SS, UK.ORCID http://orcid.org/0000-0002-2977-4929
Sandy CochranSchool of Engineering, University of Glasgow, Glasgow, G12 8QQ, UK.
Gabriel C SpaldingDepartment of Physics, Illinois Wesleyan University, Bloomington, IL, 61701, USA.ORCID http://orcid.org/0000-0003-1126-3968
David A LyonsCentre for Discovery Brain Sciences, MS Society Centre for Translational Research, Euan MacDonald Centre for Motor Neurone Disease Research, University of Edinburgh, Edinburgh, EH16 4SB, UK.ORCID http://orcid.org/0000-0003-1166-4454
Kishan DholakiaSUPA, School of Physics and Astronomy, University of St Andrews, St Andrews, KY16 9SS, UK. kd1@st-andrews.ac.uk.
University of St Andrews · GBUniversity of Edinburgh · GBIllinois Wesleyan University · USLiverpool John Moores University · GBUniversity of Glasgow · GB

Funding

Wellcome Trust 102836/Z/13/Z
6 · The paper itself

Abstract

Contactless sample confinement would enable a whole host of new studies in developmental biology and neuroscience, in particular, when combined with long-term, wide-field optical imaging. To achieve this goal, we demonstrate a contactless acoustic gradient force trap for sample confinement in light sheet microscopy. Our approach allows the integration of real-time environmentally controlled experiments with wide-field low photo-toxic imaging, which we demonstrate on a variety of marine animal embryos and larvae. To illustrate the key advantages of our approach, we provide quantitative data for the dynamic response of the heartbeat of zebrafish larvae to verapamil and norepinephrine, which are known to affect cardiovascular function. Optical flow analysis allows us to explore the cardiac cycle of the zebrafish and determine the changes in contractile volume within the heart. Overcoming the restrictions of sample immobilisation and mounting can open up a broad range of studies, with real-time drug-based assays and biomechanical analyses.

Indexed as

AcousticsAnimalsDevelopmental BiologyEmbryo, NonmammalianLarvaMicroscopy, FluorescenceTime-Lapse ImagingZebrafish

Identifiers

PMID30737391
PMCPMC6368588
OpenAlexW2913080718

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.