Evidence map›Paper›PMID 30737244›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2019

Comprehensive Genetic Characterization of Human Thyroid Cancer Cell Lines: A Validated Panel for Preclinical Studies.

Iñigo Landa, Nikita Pozdeyev, Christopher Korch, Laura A Marlow, Robert C Smallridge, John A Copland, Ying C Henderson, Stephen Y Lai, Gary L Clayman, Naoyoshi Onoda and 6 more

Open access · greenAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 138 papers.

0numbers the graph read from it
0cells of the map it votes in
138citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

138 citing papers in PubMed, 185 citations in OpenAlex.

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  15. Dual targeting of BRAFJournal of experimental & clinical cancer research : CR · 2026
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  16. Review
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78 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 2 countries.

Iñigo LandaHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York.ORCID 0000-0002-2817-8295
Nikita PozdeyevDivision of Endocrinology, Metabolism and Diabetes, University of Colorado Anschutz Medical Campus, Aurora, Colorado.
Christopher KorchUniversity of Colorado Cancer Center, Aurora, Colorado.
Laura A MarlowDepartment of Cancer Biology, Mayo Clinic, Jacksonville, Florida.
Robert C SmallridgeDepartment of Cancer Biology, Mayo Clinic, Jacksonville, Florida.
John A CoplandDepartment of Cancer Biology, Mayo Clinic, Jacksonville, Florida.
Ying C HendersonDepartment of Head and Neck Surgery, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Stephen Y LaiDepartment of Head and Neck Surgery, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Gary L ClaymanThe Clayman Thyroid Center, Tampa, Florida.
Naoyoshi OnodaDepartment of Surgical Oncology, Osaka City University Graduate School of Medicine, Osaka, Japan.
Aik Choon TanUniversity of Colorado Cancer Center, Aurora, Colorado.
Maria E R Garcia-RenduelesHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York.
Jeffrey A KnaufHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York.ORCID 0000-0003-4456-8792
Bryan R HaugenDivision of Endocrinology, Metabolism and Diabetes, University of Colorado Anschutz Medical Campus, Aurora, Colorado.
James A FaginHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York. faginj@mskcc.org rebecca.schweppe@ucdenver.edu.
Rebecca E SchweppeDivision of Endocrinology, Metabolism and Diabetes, University of Colorado Anschutz Medical Campus, Aurora, Colorado. faginj@mskcc.org rebecca.schweppe@ucdenver.edu.ORCID 0000-0001-7502-0151
Memorial Sloan Kettering Cancer Center · USJacksonville College · USUniversity of Colorado Anschutz Medical Campus · USThe University of Texas MD Anderson Cancer Center · USUniversity of Colorado Cancer Center · USOsaka City University · JPTampa–Hillsborough County Public Library System · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
SPORE in Thyroid CancerP50CA172012 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI FAGIN, JAMES A · 2014 to 2018
$10.3M
MOLECULAR PATHOPHYSIOLOGY OF THYROID CELL GROWTHR01CA050706 · NCI · UNIVERSITY OF CINCINNATI · PI FAGIN, JAMES A · 1995 to 2023
$7.5M
ONCOGENIC EVENTS IN THYROID NEOPLASIAR01CA072597 · NCI · UNIVERSITY OF CINCINNATI · PI FAGIN, JAMES A · 1997 to 2020
$6.7M
A Validated Resource of Thyroid Cancer Cell Lines for Pathway DiscoveryRC1CA147371 · NCI · UNIVERSITY OF COLORADO DENVER · PI FAGIN, JAMES A, HAUGEN, BRYAN R. · 2009 to 2010
$1000k
NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA046934NCI NIH HHS P50 CA172012NCI NIH HHS R01 CA050706NCI NIH HHS R01 CA072597NCI NIH HHS RC1 CA147371
6 · The paper itself

Abstract

purposeThyroid cancer cell lines are valuable models but have been neglected in pancancer genomic studies. Moreover, their misidentification has been a significant problem. We aim to provide a validated dataset for thyroid cancer researchers. EXPERIMENTAL

designWe performed next-generation sequencing (NGS) and analyzed the transcriptome of 60 authenticated thyroid cell lines and compared our findings with the known genomic defects in human thyroid cancers.

resultsUnsupervised transcriptomic analysis showed that 94% of thyroid cell lines clustered distinctly from other lineages. Thyroid cancer cell line mutations recapitulate those found in primary tumors (e.g.,

conclusionsThis cell line resource will help inform future preclinical studies exploring tumor-specific dependencies.

Indexed as

MutationAnimalsBiomarkers, TumorCell Line, TumorDisease Models, AnimalHigh-Throughput Nucleotide SequencingHumansProto-Oncogene Proteins B-rafTelomeraseThyroid NeoplasmsTumor Suppressor Protein p53Validation Studies as TopicBiomarkers, TumorBRAF protein, humanProto-Oncogene Proteins B-rafTelomeraseTERT protein, humanTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID30737244
PMCPMC6522280
OpenAlexW2913765486

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.