Evidence map›Paper›PMID 30736742›Full record

ArticleBMC genomics2019

Virulence factor landscape of a Staphylococcus aureus sequence type 45 strain, MCRF184.

Vijay Aswani, Fares Najar, Madhulatha Pantrangi, Bob Mau, William R Schwan, Sanjay K Shukla

Abstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
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  4. Article
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  10. Article
  11. Genomic Analysis of GlobalFrontiers in microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Vijay AswaniDepartment of Internal Medicine & Pediatrics, University at Buffalo, Buffalo, New York, USA.
Fares NajarDepartment of Chemistry & Biochemistry, University of Oklahoma, Norman, OK, USA.
Madhulatha PantrangiCenter for Human Genetics, 1000 North Oak Avenue # MLR, Marshfield, WI, 54449, USA.
Bob MauWisconsin Institute for Discovery, University of Wisconsin, Madison, WI, USA.
William R SchwanDepartment of Microbiology, University of Wisconsin -La Crosse, La Crosse, WI, USA.
Sanjay K ShuklaCenter for Human Genetics, 1000 North Oak Avenue # MLR, Marshfield, WI, 54449, USA. shukla.sanjay@marshfieldresearch.org.

Funding

Marshfield Clinic Research Institute NA
6 · The paper itself

Abstract

backgroundWe describe the virulence factors of a methicillin-sensitive Staphylococcus aureus sequence type (ST) 45 strain, MCRF184, (spa type t917), that caused severe necrotizing fasciitis in a 72-year-old diabetic male. The genome of MCRF184 possesses three genomic islands: a relatively large type III νSaα with 42 open reading frames (ORFs) that includes superantigen- and lipoprotein-like genes, a truncated νSaβ that consists mostly of the enterotoxin gene cluster (egc), and a νSaγ island with 18 ORFs including α-toxin. Additionally, the genome has two phage-related regions: phage φSa3 with three genes of the immune evasion cluster (IEC), and an incomplete phage that is distinct from other S. aureus phages. Finally, the region between orfX and orfY harbors a putative efflux pump, acetyltransferase, regulators, and mobilization genes instead of genes of SCCmec.

resultsVirulence factors included phenol soluble modulins (PSMs) α1 through α4 and PSMs β1 and β2. Ten ORFs identified in MCRF184 had not been reported in previously sequenced S. aureus strains.

conclusionThe dire clinical outcome in the patient and the described virulence factors all suggest that MCRF184, a ST45 strain is a highly virulent strain of S. aureus.

Indexed as

AgedHumansImmune EvasionMaleOpen Reading FramesStaphylococcus aureusVirulence FactorsVirulence FactorsNecrotizing fasciitis, ST45, enterotoxin gene clusterStaphylococcus aureusVirulence factors

Identifiers

PMID30736742
PMCPMC6368776

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.