Evidence map›Paper›PMID 30736292›Full record

ArticleInternational journal of molecular sciences2019

Dynamic Characterization of the Human Heme Nitric Oxide/Oxygen (HNOX) Domain under the Influence of Diatomic Gaseous Ligands.

Rana Rehan Khalid, Abdul Rauf Siddiqi, Efstratios Mylonas, Arooma Maryam, Michael Kokkinidis

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Gas Sensing by Bacterial H-NOX Proteins: An MD Study.Molecules (Basel, Switzerland) · 2020
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Rana Rehan KhalidDepartment of Biosciences, COMSATS University, Islamabad 45550, Pakistan. ray.binm@gmail.com.
Abdul Rauf SiddiqiDepartment of Biosciences, COMSATS University, Islamabad 45550, Pakistan. abdulraufsher@gmail.com.
Efstratios MylonasInstitute of Molecular Biology and Biotechnology, Foundation for Research and Technology-Hellas (IMBB-FORTH), 70013 Heraklion, Greece. stratos_mylonas@imbb.forth.gr.
Arooma MaryamDepartment of Biosciences, COMSATS University, Islamabad 45550, Pakistan. aroomabinm@yahoo.com.
Michael KokkinidisDepartment of Biology, University of Crete, 70013 Heraklion, Greece. kokkinid@imbb.forth.gr.ORCID 0000-0002-3112-6904
COMSATS University Islamabad · PKUniversity of Crete · GRFORTH Institute of Molecular Biology and Biotechnology · GR

Funding

Erasmus Mundus Action 2, Strand I 552850-EM-1-2014-1-IT-ERA MUNDUS-EMA21Higher Education Commision, Pakistan NRPU 4050
6 · The paper itself

Abstract

Soluble guanylate cyclase (sGC) regulates numerous physiological processes. The β subunit Heme Nitric Oxide/Oxygen (HNOX) domain makes this protein sensitive to small gaseous ligands. The structural basis of the activation mechanism of sGC under the influence of ligands (NO, O₂, CO) is poorly understood. We examine the effect of different ligands on the human sGC HNOX domain. HNOX systems with gaseous ligands were generated and explored using Molecular Dynamics (MD). The distance between heme Fe

Indexed as

HemeHumansHydrogen BondingLigandsMolecular ConformationMolecular Docking SimulationMolecular Dynamics SimulationNitric OxideOxygenProtein BindingSoluble Guanylyl CyclaseHemeLigandsNitric OxideOxygenSoluble Guanylyl Cyclasehydrogen bond occupancymetal center parameter buildermolecular dynamics simulationsprincipal component analysisquantum calculationssoluble guanylate cyclase

Identifiers

PMID30736292
PMCPMC6387030
OpenAlexW2911886864

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.