Evidence map›Paper›PMID 30735654›Full record

ReviewMolecular cell2019

R-Loops as Cellular Regulators and Genomic Threats.

Madzia P Crossley, Michael Bocek, Karlene A Cimprich

Open access · bronzeAbstract readReview
In one paragraph

Review in Molecular cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 497 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
497citing papers in PubMed, 1 pooled it
33.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

497 citing papers in PubMed, 1 synthesis or guideline pooled it, 742 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Genome-Wide Mapping of R-Loops in S. cerevisiae by H-CRAC.Methods in molecular biology (Clifton, N.J.) · 2027
    Article
  4. Article
  5. Mechanisms and disease relevance of DNA break repair pathway choice.Nature reviews. Molecular cell biology · 2026
    Review
  6. Review
  7. Review
  8. Review
  9. Review
  10. Article
  11. G-Quadruplexes: Structural Diversity and Emerging Roles in Biomolecular Condensation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. NAT10-dependent NCell reports · 2026
    Article
  19. Article
  20. Review

437 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Madzia P CrossleyDepartment of Chemical and Systems Biology, Stanford University School of Medicine, 318 Campus Drive, Stanford, CA 94305-5441, USA.
Michael BocekDepartment of Chemical and Systems Biology, Stanford University School of Medicine, 318 Campus Drive, Stanford, CA 94305-5441, USA.
Karlene A CimprichDepartment of Chemical and Systems Biology, Stanford University School of Medicine, 318 Campus Drive, Stanford, CA 94305-5441, USA. Electronic address: cimprich@stanford.edu.
Stanford University · US

Funding

Leveraging innovative technologies in basic and clinical cancer researchT32CA009302 · NCI · STANFORD UNIVERSITY · PI LAURA D ATTARDI, Aaron M Newman · 1985 to 2026
$19.1M
Transcription-Associated Genome InstabilityR01GM119334 · NIGMS · STANFORD UNIVERSITY · PI Karlene A Cimprich · 2016 to 2026
$4.0M
Mechanisms Linking Genome Stability to RNA MetabolismR01GM100489 · NIGMS · STANFORD UNIVERSITY · PI CIMPRICH, KARLENE A · 2012 to 2015
$1.5M
NCI NIH HHS T32 CA009302NIGMS NIH HHS R01 GM100489NIGMS NIH HHS R01 GM119334
6 · The paper itself

Abstract

During transcription, the nascent RNA strand can base pair with its template DNA, displacing the non-template strand as ssDNA and forming a structure called an R-loop. R-loops are common across many domains of life and cause DNA damage in certain contexts. In this review, we summarize recent results implicating R-loops as important regulators of cellular processes such as transcription termination, gene regulation, and DNA repair. We also highlight recent work suggesting that R-loops can be problematic to cells as blocks to efficient transcription and replication that trigger the DNA damage response. Finally, we discuss how R-loops may contribute to cancer, neurodegeneration, and inflammatory diseases and compare the available next-generation sequencing-based approaches to map R-loops genome wide.

Indexed as

GenomeGenomic InstabilityAnimalsCell NucleusDNADNA DamageDNA RepairGene Expression RegulationHumansNucleic Acid ConformationNucleic Acid HeteroduplexesRNAStructure-Activity RelationshipTranscription, GeneticDNANucleic Acid HeteroduplexesRNA

Identifiers

PMID30735654
PMCPMC6402819
OpenAlexW2913346540

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.