Evidence map›Paper›PMID 30735500›Full record

ArticlePLoS genetics2019

Tissue- and sex-specific small RNAomes reveal sex differences in response to the environment.

Alexandra Bezler, Fabian Braukmann, Sean M West, Arthur Duplan, Raffaella Conconi, Frédéric Schütz, Pierre Gönczy, Fabio Piano, Kristin Gunsalus, Eric A Miska and 1 more

Abstract read
In one paragraph

Article in PLoS genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
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  6. Parental-effect gene-drive elements under partial selfing, or why dobioRxiv : the preprint server for biology · 2024
    Article
  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Alexandra BezlerDepartment of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.
Fabian BraukmannWellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0003-2660-450X
Sean M WestCenter for Genomics & Systems Biology, New York University, New York, New York, United States of America.ORCID 0000-0003-1038-0222
Arthur DuplanDepartment of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.
Raffaella ConconiDepartment of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.
Frédéric SchützBioinformatics Core Facility; SIB Swiss Institute of Bioinformatics and Centre for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.
Pierre GönczySwiss Institute for Experimental Cancer Research (ISREC), Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland.ORCID 0000-0002-6305-6883
Fabio PianoCenter for Genomics & Systems Biology, New York University, New York, New York, United States of America.
Kristin GunsalusCenter for Genomics & Systems Biology, New York University, New York, New York, United States of America.
Eric A MiskaWellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0002-4450-576X
Laurent KellerDepartment of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.

Funding

A Systematic RNAi-based Map of C. elegans EmbryogenesisR01HD046236 · NICHD · NEW YORK UNIVERSITY · PI GUNSALUS, KRISTIN C, PIANO, FABIO · 2004 to 2013
$4.5M
Encyclopedia of C elegans 3'UTRS and their regulatory elementsU01HG004276 · NHGRI · NEW YORK UNIVERSITY · PI PIANO, FABIO · 2007 to 2011
$3.0M
Cancer Research UK 18583Cancer Research UK C13474/A18583Cancer Research UK C6946/A14492NHGRI NIH HHS U01 HG004276NICHD NIH HHS R01 HD046236Wellcome Trust 092096/Z/10/ZWellcome Trust 104640/Z/14/Z
6 · The paper itself

Abstract

RNA interference (RNAi) related pathways are essential for germline development and fertility in metazoa and can contribute to inter- and trans-generational inheritance. In the nematode Caenorhabditis elegans, environmental double-stranded RNA provided by feeding can lead to heritable changes in phenotype and gene expression. Notably, transmission efficiency differs between the male and female germline, yet the underlying mechanisms remain elusive. Here we use high-throughput sequencing of dissected gonads to quantify sex-specific endogenous piRNAs, miRNAs and siRNAs in the C. elegans germline and the somatic gonad. We identify genes with exceptionally high levels of secondary 22G RNAs that are associated with low mRNA expression, a signature compatible with silencing. We further demonstrate that contrary to the hermaphrodite germline, the male germline, but not male soma, is resistant to environmental RNAi triggers provided by feeding, in line with previous work. This sex-difference in silencing efficacy is associated with lower levels of gonadal RNAi amplification products. Moreover, this tissue- and sex-specific RNAi resistance is regulated by the germline, since mutant males with a feminized germline are RNAi sensitive. This study provides important sex- and tissue-specific expression data of miRNA, piRNA and siRNA as well as mechanistic insights into sex-differences of gene regulation in response to environmental cues.

Indexed as

AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsFemaleGene Expression RegulationGerm CellsGonadsHigh-Throughput Nucleotide SequencingMaleMicroRNAsRNA, Double-StrandedRNA InterferenceRNA, MessengerRNA, Small InterferingSex CharacteristicsCaenorhabditis elegans ProteinsMicroRNAsRNA, Double-StrandedRNA, MessengerRNA, Small Interfering

Identifiers

PMID30735500
PMCPMC6383947

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.