Evidence map›Paper›PMID 30735467›Full record

ArticlemAbs2019

High-throughput retrieval of physical DNA for NGS-identifiable clones in phage display library.

Jinsung Noh, Okju Kim, Yushin Jung, Haejun Han, Jung-Eun Kim, Soohyun Kim, Sanghyub Lee, Jaeseong Park, Rae Hyuck Jung, Sang Il Kim and 9 more

Abstract read
In one paragraph

Article in mAbs, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Selection of Affibody Affinity Proteins from Phagemid Libraries.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  3. Article
  4. Review
  5. Review
  6. Reconstruction of full antibody sequences in NGS datasets and accurate VComputational and structural biotechnology journal · 2022
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Jinsung Noha Department of Electrical Engineering and Computer Science , Seoul National University , Seoul , Republic of Korea.ORCID 0000-0002-7167-8113
Okju Kima Department of Electrical Engineering and Computer Science , Seoul National University , Seoul , Republic of Korea.
Yushin Jungb Bioengineering Research Institute, Celemics, Inc , Seoul , Republic of Korea.ORCID 0000-0003-3698-8869
Haejun Hanb Bioengineering Research Institute, Celemics, Inc , Seoul , Republic of Korea.ORCID 0000-0003-1822-8567
Jung-Eun Kimb Bioengineering Research Institute, Celemics, Inc , Seoul , Republic of Korea.
Soohyun Kimc Department of Biochemistry and Molecular Biology , Seoul National University College of Medicine , Seoul , Republic of Korea.
Sanghyub Leeb Bioengineering Research Institute, Celemics, Inc , Seoul , Republic of Korea.
Jaeseong Parkb Bioengineering Research Institute, Celemics, Inc , Seoul , Republic of Korea.ORCID 0000-0001-5684-3208
Rae Hyuck Junge Inter-University Semiconductor Research Center , Seoul National University , Seoul , Republic of Korea.ORCID 0000-0002-5043-9332
Sang Il Kimc Department of Biochemistry and Molecular Biology , Seoul National University College of Medicine , Seoul , Republic of Korea.
Jaejun Parkb Bioengineering Research Institute, Celemics, Inc , Seoul , Republic of Korea.
Jerome Hanc Department of Biochemistry and Molecular Biology , Seoul National University College of Medicine , Seoul , Republic of Korea.ORCID 0000-0001-7679-8088
Hyunho Leea Department of Electrical Engineering and Computer Science , Seoul National University , Seoul , Republic of Korea.ORCID 0000-0002-3251-2639
Duck Kyun Yooc Department of Biochemistry and Molecular Biology , Seoul National University College of Medicine , Seoul , Republic of Korea.ORCID 0000-0002-3341-4897
Amos C Leeh Interdisciplinary Program in Bioengineering , Seoul National University , Seoul , Republic of Korea.
Euijin Kwonb Bioengineering Research Institute, Celemics, Inc , Seoul , Republic of Korea.
Taehoon Ryub Bioengineering Research Institute, Celemics, Inc , Seoul , Republic of Korea.
Junho Chungc Department of Biochemistry and Molecular Biology , Seoul National University College of Medicine , Seoul , Republic of Korea.ORCID 0000-0003-4873-8031
Sunghoon Kwona Department of Electrical Engineering and Computer Science , Seoul National University , Seoul , Republic of Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In antibody discovery, in-depth analysis of an antibody library and high-throughput retrieval of clones in the library are crucial to identifying and exploiting rare clones with different properties. However, existing methods have technical limitations, such as low process throughput from the laborious cloning process and waste of the phenotypic screening capacity from unnecessary repetitive tests on the dominant clones. To overcome the limitations, we developed a new high-throughput platform for the identification and retrieval of clones in the library, TrueRepertoire™. This new platform provides highly accurate sequences of the clones with linkage information between heavy and light chains of the antibody fragment. Additionally, the physical DNA of clones can be retrieved in high throughput based on the sequence information. We validated the high accuracy of the sequences and demonstrated that there is no platform-specific bias. Moreover, the applicability of TrueRepertoire™ was demonstrated by a phage-displayed single-chain variable fragment library targeting human hepatocyte growth factor protein.

Indexed as

Avian ProteinsSingle-Chain AntibodiesAnimalsBacteriophagesCell Surface Display TechniquesChickensAvian ProteinsSingle-Chain AntibodiesAntibody discoveryantibody libraryantibody library sequencingclone retrievallead antibodymonoclonal antibodyNGSphage displayrare clones

Identifiers

PMID30735467
PMCPMC6512904

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.