Evidence map›Paper›PMID 30735194›Full record

ArticleJournal of visualized experiments : JoVE2019

Live Cell Analysis of Shear Stress on Pseudomonas aeruginosa Using an Automated Higher-Throughput Microfluidic System.

Arin L Sutlief, Helena Valquier-Flynn, Christina Wilson, Marco Perez, Hunter Kleinschmidt, Brett J Schofield, Elizabeth Delmain, Andrea E Holmes, Christopher D Wentworth

Open access · bronzeAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Arin L SutliefDepartment of Chemistry, Doane University; arin.sutlief@doane.edu.
Helena Valquier-FlynnDepartment of Chemistry, Doane University.
Christina WilsonDepartment of Chemistry, Doane University.
Marco PerezDepartment of Chemistry, Doane University.
Hunter KleinschmidtDepartment of Biology, Doane University.
Brett J SchofieldDepartment of Biology, Doane University.
Elizabeth DelmainDepartment of Pathology and Microbiology, University of Nebraska Medical Center.
Andrea E HolmesDepartment of Chemistry, Doane University.
Christopher D WentworthDepartment of Physics and Engineering, Doane University; chris.wentworth@doane.edu.
Doane University · USUniversity of Nebraska Medical Center · US

Funding

UNMC Structural Biology CoreP20GM103427 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI PAUL L SORGEN · 2012 to 2026
$59.2M
NIGMS NIH HHS P20 GM103427
6 · The paper itself

Abstract

A higher-throughput microfluidic in vitro bioreactor coupled with fluorescence microscopy has been used to study bacterial biofilm growth and morphology, including Pseudomonas aeruginosa (P. aeruginosa). Here, we will describe how the system can be used to study the growth kinetics and the morphological properties such as the surface roughness and textural entropy of P. aeruginosa strain PA01 that expresses an enhanced green fluorescent protein (PA01-EGFP). A detailed protocol will describe how to grow and seed PA01-EGFP cultures, how to set up the microscope and autorun, and conduct the image analysis to determine growth rate and morphological properties using a variety of shear forces that are controlled by the microfluidic device. This article will provide a detailed description of a technique to improve the study of PA01-EGFP biofilms which eventually can be applied towards other strains of bacteria, fungi, or algae biofilms using the microfluidic platform.

Indexed as

Stress, MechanicalAutomationBiofilmsBioreactorsEntropyGreen Fluorescent ProteinsImage Processing, Computer-AssistedMicrofluidicsMicroscopy, FluorescencePseudomonas aeruginosaSoftwareenhanced green fluorescent proteinGreen Fluorescent Proteins

Identifiers

PMID30735194
PMCPMC6455916
OpenAlexW2909290995

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.