Evidence map›Paper›PMID 30735119›Full record

ArticleeLife2019

zGrad is a nanobody-based degron system that inactivates proteins in zebrafish.

Naoya Yamaguchi, Tugba Colak-Champollion, Holger Knaut

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 72 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Nanobodies targeting hnRNPA2/B1 and tau.bioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Article
  8. Article
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  10. Review
  11. Article
  12. Article
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  14. Control of cardiac contractions using Cre-lox and degron strategies in zebrafish.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. Adult zebrafish as advanced models of human disease.Disease models & mechanisms · 2023
    Article
  16. Conditional protein degradation inFrontiers in bioengineering and biotechnology · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Naoya YamaguchiSkirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, United States.ORCID 0000-0003-0573-695X
Tugba Colak-ChampollionSkirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, United States.ORCID 0000-0001-5843-1717
Holger KnautSkirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, United States.ORCID 0000-0002-8399-8720
National Institute of Neurological Disorders and Stroke · US

Funding

Molecular and Cellular Control of Collective Cell Migration.R01NS102322 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KNAUT, HOLGER · 2018 to 2022
$2.4M
Engineering tools for rapid loss of protein function in model organismsR21HD088779 · NICHD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KNAUT, HOLGER, NANCE, JEREMY · 2016 to 2017
$466k
Eunice Kennedy Shriver National Institute of Child Health and Human Development R21HD088779New York State Stem Cell Science C322560GGNICHD NIH HHS R21 HD088779NINDS NIH HHS R01 NS102322NINDS NIH HHS R01NS102322NYSTEM C322560GG
6 · The paper itself

Abstract

The analysis of protein function is essential to modern biology. While protein function has mostly been studied through gene or RNA interference, more recent approaches to degrade proteins directly have been developed. Here, we adapted the anti-GFP nanobody-based system deGradFP from flies to zebrafish. We named this system zGrad and show that zGrad efficiently degrades transmembrane, cytosolic and nuclear GFP-tagged proteins in zebrafish in an inducible and reversible manner. Using tissue-specific and inducible promoters in combination with functional GFP-fusion proteins, we demonstrate that zGrad can inactivate transmembrane and cytosolic proteins globally, locally and temporally with different consequences. Global protein depletion results in phenotypes similar to loss of gene activity, while local and temporal protein inactivation yields more restricted and novel phenotypes. Thus, zGrad is a versatile tool to study the spatial and temporal requirement of proteins in zebrafish.

Indexed as

ProteolysisAnimalsAnimals, Genetically ModifiedCytosolDrosophilaDrosophila melanogasterGreen Fluorescent ProteinsNuclear ProteinsSingle-Domain AntibodiesZebrafishGreen Fluorescent ProteinsNuclear ProteinsSingle-Domain Antibodiescell biologydegron systemdevelopmental biologygene expressionprotein degradationzebrafish

Identifiers

PMID30735119
PMCPMC6384026
OpenAlexW2979284428

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.