Evidence map›Paper›PMID 30734172›Full record

ArticleMolecular biology reports2019

Family-1 UDP glycosyltransferases in pear (Pyrus bretschneideri): Molecular identification, phylogenomic characterization and expression profiling during stone cell formation.

Xi Cheng, Abdullah Muhammad, Guohui Li, Jingyun Zhang, Jun Cheng, Jingxiang Qiu, Taoshan Jiang, Qing Jin, Yongping Cai, Yi Lin

Abstract read
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In one paragraph

Article in Molecular biology reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

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  6. International journal of molecular sciences · 2022
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  13. Tandem UGT71B5s Catalyze Lignan Glycosylation inFrontiers in plant science · 2021
    Article
  14. Article
  15. Functional analysis of a novelHorticulture research · 2020
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Xi ChengSchool of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China.ORCID http://orcid.org/0000-0002-5669-7092
Abdullah MuhammadSchool of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China.
Guohui LiSchool of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China.
Jingyun ZhangSchool of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China.
Jun ChengSchool of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China.
Jingxiang QiuSchool of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China.
Taoshan JiangSchool of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China.
Qing JinSchool of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China.
Yongping CaiSchool of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China. ypcaiah@163.com.ORCID http://orcid.org/0000-0002-0842-6968
Yi LinSchool of Life Science, Anhui Agricultural University, No. 130, Changjiang West Road, Hefei, 230036, China. yjsc01@ahau.edu.cn.
Anhui Agricultural University · CN

Funding

National Natural Science Foundation of China 31640068Natural Science Foundation of Anhui Province 1808085QC79
6 · The paper itself

Abstract

Stone cells are a characteristic trait of pear fruits, and excessive stone cell formation has a significant negative impact on the texture and flavour of the pulp. Lignin is one of the main components of stone cells. Family-1 uridine diphosphate-glycosyltransferases (UGTs) are responsible for the glycosylation modification of monolignols. However, information remains limited regarding the relationship between UGTs and stone cell formation. To address this problem, we identified 139 UGTs from the pear genome, which were distributed in 15 phylogenetic groups (A-M, O, and P). We also performed a collinearity analysis of UGTs among four Rosaceae plants (pear, peach, mei, and strawberry). Phylogenetic analysis suggested that 13 PbUGTs might be related to the glycosylation of monolignols. Analysis of expression patterns demonstrated that most putative monolignol glycosylation-related PbUGTs not only showed high expression levels in flowers and buds but were also induced by exogenous ABA, SA, and MeJA. In addition, the transcript level of Pbr005014.1 (named PbUGT72AJ2) was consistent with the changing trend of lignin content in pear fruit, and the transcript level was also higher in 'Dangshan Su' pear with higher lignin and stone cell contents. Subcellular localization results showed that PbUGT72AJ2 was located mainly in the cytomembrane and cytoplasm. Based on our study, PbUGT72AJ2 is considered to be a monolignol glycosylation-related UGT. Our results provide an important source for the identification of UGTs and a foundation for the future understanding and manipulation of lignin metabolism and stone cell formation in pear fruit.

Indexed as

FruitGene Expression ProfilingGene Expression Regulation, PlantGlycosyltransferasesLigninMultigene FamilyPhylogenyPlant ProteinsPyrusSeedsTranscriptomeGlycosyltransferasesLigninPlant ProteinsLigninPearPhylogenetic and expression analysisStone cellSubcellular localizationUGT family

Identifiers

PMID30734172
OpenAlexW2912508972

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.