Evidence map›Paper›PMID 30733555›Full record

ArticleScientific reports2019

Identification of non-specific Lipid Transfer Protein gene family members in Solanum lycopersicum and insights into the features of Sola l 3 protein.

Nunzio D'Agostino, Martina Buonanno, Joëlle Ayoub, Amalia Barone, Simona Maria Monti, Maria Manuela Rigano

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Genome-Wide Identification and Expression Analysis ofInternational journal of molecular sciences · 2022
    Article
  13. Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Genome-Wide Analysis of nsLTP Gene Family and Identification ofInternational journal of molecular sciences · 2021
    Article
  19. Transcriptome Analysis of Jojoba (Plants (Basel, Switzerland) · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Nunzio D'AgostinoCREA Research Centre for Vegetable and Ornamental Crops, Pontecagnano Faiano, Italy. nunzio.dagostino@crea.gov.it.ORCID 0000-0001-9840-3817
Martina BuonannoInstitute of Biostructures and Bioimaging, CNR, Naples, Italy.
Joëlle AyoubInstitute of Biostructures and Bioimaging, CNR, Naples, Italy.
Amalia BaroneDepartment of Agricultural Sciences, University of Naples Federico II, Portici, Italy.
Simona Maria MontiInstitute of Biostructures and Bioimaging, CNR, Naples, Italy. simonamaria.monti@cnr.it.
Maria Manuela RiganoDepartment of Agricultural Sciences, University of Naples Federico II, Portici, Italy.
Federico II University Hospital · ITInstitute of Biostructure and Bioimaging · ITUniversity of Campania "Luigi Vanvitelli" · IT

Funding

DNA SAMPLE ANALYSIS27307C2007 · NIEHS · PI LEHMAN, TERESA · 2007 to 2007
$74k
NIEHS NIH HHS 27307C2007
6 · The paper itself

Abstract

Non-specific lipid transfer proteins (nsLTPs) are characterized by an eight-cysteine motif backbone that is stabilized by four disulphide bonds. The strong interest towards this protein family is mainly due to the fact that nsLTPs are involved in many biological processes and have been identified as major human allergens. Since tomato (Solanum lycopersicum L.) is one of the most consumed and allergenic vegetables, a full characterization of this family is needed. In this study, hidden Markov model profiles were used to identify nsLTPs within the tomato protein complement. Following manual curation, 64 nsLTP genes were classified into six sub-families. Furthermore, nsLTP gene structure, distribution and arrangement along tomato chromosomes were investigated. Available RNA-seq expression profile data and Real-Time PCR analyses were used to derive expression patterns of tomato nsLTPs in different tissues/organs. Non-specific LTP genes with high level of expression in tomato fruits were filtered out since they could play a key role in tomato allergenicity. Among these genes was Solyc10g075090 that encodes the allergen Sola l 3. Finally, cloning, heterologous expression, purification and biochemical characterization of the recombinant protein Sola l 3 was performed.

Indexed as

Carrier ProteinsChromosomes, PlantGene DuplicationGene Expression Regulation, PlantPhylogenyPlant ProteinsSolanum lycopersicumCarrier ProteinsPlant Proteinssterol carrier proteins

Identifiers

PMID30733555
PMCPMC6367377
OpenAlexW2921000364

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.