Evidence map›Paper›PMID 30733520›Full record

ArticleScientific reports2019

Bioinformatic discovery of a toxin family in Chryseobacterium piperi with sequence similarity to botulinum neurotoxins.

Michael James Mansfield, Travis Gwynn Wentz, Sicai Zhang, Elliot Jeon Lee, Min Dong, Shashi Kant Sharma, Andrew Charles Doxey

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Advances in Clostridial and Related Neurotoxins.International journal of molecular sciences · 2022
    Article
  7. Review
  8. Review
  9. Article
  10. Characterization and Comparative Genomic Analysis of a Highly Colistin-ResistantFrontiers in cellular and infection microbiology · 2022
    Article
  11. Review
  12. Article
  13. Article
  14. Novel Native and Engineered Botulinum Neurotoxins.Handbook of experimental pharmacology · 2021
    Review
  15. Endogenous CRISPR-Cas Systems in Group IFrontiers in microbiology · 2021
    Article
  16. The Structure and Classification of Botulinum Toxins.Handbook of experimental pharmacology · 2021
    Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Michael James MansfieldDepartment of Biology, University of Waterloo, 200 University Ave. West, Waterloo, Ontario, N2L 3G1, Canada.
Travis Gwynn WentzDivision of Microbiology, Center for Food Safety and Applied Nutrition, United States Food and Drug Administration, College Park, MD, 20740, USA.
Sicai ZhangDepartment of Urology, Boston Children's Hospital, Department of Microbiology and Immunobiology and Department of Surgery, Harvard Medical School, Boston, MA, 02115, USA.
Elliot Jeon LeeDepartment of Biology, University of Waterloo, 200 University Ave. West, Waterloo, Ontario, N2L 3G1, Canada.
Min DongDepartment of Urology, Boston Children's Hospital, Department of Microbiology and Immunobiology and Department of Surgery, Harvard Medical School, Boston, MA, 02115, USA. min.dong@childrens.harvard.edu.
Shashi Kant SharmaDivision of Microbiology, Center for Food Safety and Applied Nutrition, United States Food and Drug Administration, College Park, MD, 20740, USA. shashi.sharma@fda.hhs.gov.
Andrew Charles DoxeyDepartment of Biology, University of Waterloo, 200 University Ave. West, Waterloo, Ontario, N2L 3G1, Canada. acdoxey@uwaterloo.ca.ORCID 0000-0003-2015-099X
University of Waterloo · CABoston Children's Hospital · USCenter for Food Safety and Applied Nutrition · US

Funding

STRUCTURE-FUNCTION RELATIONSHIPS IN THE ALIMENTARY TRACTP30DK034854 · NIDDK · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI JONATHAN C KAGAN · 1986 to 2026
$32.4M
Molecular basis of action and pathogenesis of Clostridium difficile toxin BR01AI132387 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI DONG, MIN · 2017 to 2021
$3.5M
U.S. Department of Health & Human Services | National Institutes of Health (NIH) P30DK034854U.S. Department of Health & Human Services | National Institutes of Health (NIH) P30HD18655U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01AI132387
6 · The paper itself

Abstract

Clostridial neurotoxins (CNTs), which include botulinum neurotoxins (BoNTs) and tetanus neurotoxin (TeNT), are the most potent toxins known to science and are the causative agents of botulism and tetanus, respectively. The evolutionary origins of CNTs and their relationships to other proteins remains an intriguing question. Here we present a large-scale bioinformatic screen for putative toxin genes in all currently available genomes. We detect a total of 311 protein sequences displaying at least partial homology to BoNTs, including 161 predicted toxin sequences that have never been characterized. We focus on a novel toxin family from Chryseobacterium piperi with homology to BoNTs. We resequenced the genome of C. piperi to confirm and further analyze the genomic context of these toxins, and also examined their potential toxicity by expression of the protease domain of one C. piperi toxin in human cells. Our analysis suggests that these C. piperi sequences encode a novel family of metalloprotease toxins that are distantly related to BoNTs with similar domain architecture. These toxins target a yet unknown class of substrates, potentially reflecting divergence in substrate specificity between the metalloprotease domains of these toxins and the related metalloprotease domain of clostridial neurotoxins.

Indexed as

Bacterial ToxinsBotulinum ToxinsCell DeathChryseobacteriumComputational BiologyData MiningGenome, BacterialHEK293 CellsHumansModels, MolecularMultigene FamilyProtein ConformationProtein DomainsSequence AlignmentTetanus ToxinBacterial ToxinsBotulinum ToxinsTetanus Toxin

Identifiers

PMID30733520
PMCPMC6367388
OpenAlexW2938011530

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.