Evidence map›Paper›PMID 30733464›Full record

ArticleScientific reports2019

Defining the genes for the final steps in biosynthesis of the complex polyketide antibiotic mupirocin by Pseudomonas fluorescens NCIMB10586.

Jack A Connolly, Amber Wilson, Malgorzata Macioszek, Zhongshu Song, Luoyi Wang, Hadi H Mohammad, Mukul Yadav, Maura di Martino, Claire E Miller, Joanne Hothersall and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

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  6. Genetic factors involved in rhizosphere colonization by phytobeneficialComputational and structural biotechnology journal · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 3 countries.

Jack A ConnollySchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
Amber WilsonSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
Malgorzata MacioszekSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
Zhongshu SongSchool of Chemistry, University of Bristol, Cantock's Close, Bristol, BS8 1TS, UK.
Luoyi WangSchool of Chemistry, University of Bristol, Cantock's Close, Bristol, BS8 1TS, UK.
Hadi H MohammadSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
Mukul YadavSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
Maura di MartinoSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
Claire E MillerSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
Joanne HothersallSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
Anthony S HainesSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
Elton R StephensSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
Matthew P CrumpSchool of Chemistry, University of Bristol, Cantock's Close, Bristol, BS8 1TS, UK.ORCID 0000-0002-7868-5818
Christine L WillisSchool of Chemistry, University of Bristol, Cantock's Close, Bristol, BS8 1TS, UK.ORCID 0000-0002-3919-3642
Thomas J SimpsonSchool of Chemistry, University of Bristol, Cantock's Close, Bristol, BS8 1TS, UK.
Peter J WinnSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
Christopher M ThomasSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK. c.m.thomas@bham.ac.uk.ORCID 0000-0002-2810-0455
University of Birmingham · GBUniversity of Bristol · GBBirmingham Research Park · GBInternational Institute of Molecular and Cell Biology · PLUniversity of Kirkuk · IQUniversity of St Andrews · GBUniversity of York · GB

Funding

Biotechnology and Biological Sciences Research Council BB/I014039/1Biotechnology and Biological Sciences Research Council BB/I014373/1Biotechnology and Biological Sciences Research Council BB/J014532/1Biotechnology and Biological Sciences Research Council BB/L01386XBiotechnology and Biological Sciences Research Council BB/L01386X/1
6 · The paper itself

Abstract

The mupirocin trans-AT polyketide synthase pathway, provides a model system for manipulation of antibiotic biosynthesis. Its final phase involves removal of the tertiary hydroxyl group from pseudomonic acid B, PA-B, producing the fully active PA-A in a complex series of steps. To further clarify requirements for this conversion, we fed extracts containing PA-B to mutants of the producer strain singly deficient in each mup gene. This additionally identified mupM and mupN as required plus the sequence but not enzymic activity of mupL and ruled out need for other mup genes. A plasmid expressing mupLMNOPVCFU + macpE together with a derivative of the producer P. fluorescens strain NCIMB10586 lacking the mup cluster allowed conversion of PA-B to PA-A. MupN converts apo-mAcpE to holo-form while MupM is a mupirocin-resistant isoleucyl tRNA synthase, preventing self-poisoning. Surprisingly, the expression plasmid failed to allow the closely related P. fluorescens strain SBW25 to convert PA-B to PA-A.

Indexed as

Anti-Bacterial AgentsBacillus subtilisBacterial ProteinsEscherichia coliMupirocinMutagenesisPlasmidsPolyketidesPolyketide SynthasesPseudomonas fluorescensAnti-Bacterial AgentsBacterial ProteinsMupirocinPolyketidesPolyketide Synthases

Identifiers

PMID30733464
PMCPMC6367315
OpenAlexW2911522839

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.