Evidence map›Paper›PMID 30733432›Full record

ArticleNature communications2019

Folliculin regulates mTORC1/2 and WNT pathways in early human pluripotency.

J Mathieu, D Detraux, D Kuppers, Y Wang, C Cavanaugh, S Sidhu, S Levy, A M Robitaille, A Ferreccio, T Bottorff and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 53 citations in OpenAlex.

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  16. Lysosomes at the Crossroads of Cell Metabolism, Cell Cycle, and Stemness.International journal of molecular sciences · 2022
    Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 3 countries.

J MathieuDepartment of Biochemistry, University of Washington, Seattle, WA, 98195, USA.
D DetrauxDepartment of Biochemistry, University of Washington, Seattle, WA, 98195, USA.
D KuppersHuman Biology Division, Fred Hutchinson Cancer Research Center, Seattle, WA, 98109, USA.
Y WangInstitute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, 98109, USA.
C CavanaughInstitute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, 98109, USA.
S SidhuDepartment of Biochemistry, University of Washington, Seattle, WA, 98195, USA.
S LevyDepartment of Biochemistry, University of Washington, Seattle, WA, 98195, USA.
A M RobitailleInstitute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, 98109, USA.
A FerreccioDepartment of Biochemistry, University of Washington, Seattle, WA, 98195, USA.
T BottorffDepartment of Biochemistry, University of Washington, Seattle, WA, 98195, USA.
A McAlisterDepartment of Biochemistry, University of Washington, Seattle, WA, 98195, USA.
L SomasundaramDepartment of Biochemistry, University of Washington, Seattle, WA, 98195, USA.
F ArtoniDepartment of Biochemistry, University of Washington, Seattle, WA, 98195, USA.
S BattleInstitute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, 98109, USA.
R D HawkinsInstitute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, 98109, USA.
R T MoonInstitute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, 98109, USA.
C B WareInstitute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, 98109, USA.
P J PaddisonInstitute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, 98109, USA. paddison@fredhutch.org.
H Ruohola-BakerDepartment of Biochemistry, University of Washington, Seattle, WA, 98195, USA. hannele@uw.edu.ORCID http://orcid.org/0000-0002-5588-4531
University of Washington · USCalifornia Institute for Regenerative Medicine · USCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZAFred Hutch Cancer Center · USUniversity of Namur · BE

Funding

Vector and Transgenic Mouse CoreP30DK017047 · NIDDK · UNIVERSITY OF WASHINGTON · PI Sakeneh Zraika · 1986 to 2026
$41.4M
Progenitor Cell Biology Consortium Administrative Coordinating CenterU01HL099997 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI TERRIN, MICHAEL L · 2009 to 2015
$29.9M
Self Renewal and Differentiation of Human Embryonic Stem CellsP01GM081619 · NIGMS · UNIVERSITY OF WASHINGTON · PI REH, THOMAS A · 2007 to 2017
$20.6M
Controlling Hematopoietic Lineage Commitment from ESC to PlateletsU01HL099993 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TOROK-STORB, BEVERLY J. · 2009 to 2015
$8.3M
MicroRNA Function in Human Embryonic Stem CellsR01GM083867 · NIGMS · UNIVERSITY OF WASHINGTON · PI RUOHOLA-BAKER, HANNELE · 2008 to 2011
$1.5M
Acquisition of Embryonic Stem Cell Metabolic Signature - Minority SupplementR01GM097372 · NIGMS · UNIVERSITY OF WASHINGTON · PI RUOHOLA-BAKER, HANNELE · 2011 to 2014
$1.3M
NHLBI NIH HHS U01 HL099993NHLBI NIH HHS U01 HL099997NIDDK NIH HHS P30 DK017047NIGMS NIH HHS P01 GM081619NIGMS NIH HHS R01 GM083867NIGMS NIH HHS R01 GM097372
6 · The paper itself

Abstract

To reveal how cells exit human pluripotency, we designed a CRISPR-Cas9 screen exploiting the metabolic and epigenetic differences between naïve and primed pluripotent cells. We identify the tumor suppressor, Folliculin(FLCN) as a critical gene required for the exit from human pluripotency. Here we show that FLCN Knock-out (KO) hESCs maintain the naïve pluripotent state but cannot exit the state since the critical transcription factor TFE3 remains active in the nucleus. TFE3 targets up-regulated in FLCN KO exit assay are members of Wnt pathway and ESRRB. Treatment of FLCN KO hESC with a Wnt inhibitor, but not ESRRB/FLCN double mutant, rescues the cells, allowing the exit from the naïve state. Using co-immunoprecipitation and mass spectrometry analysis we identify unique FLCN binding partners. The interactions of FLCN with components of the mTOR pathway (mTORC1 and mTORC2) reveal a mechanism of FLCN function during exit from naïve pluripotency.

Indexed as

Basic Helix-Loop-Helix Leucine Zipper Transcription FactorsCell LineCRISPR-Cas SystemsEstroneHumansImmunoprecipitationMechanistic Target of Rapamycin Complex 1Mechanistic Target of Rapamycin Complex 2ProteomicsReceptors, EstrogenWnt Signaling PathwayBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsESRRB protein, humanEstroneMechanistic Target of Rapamycin Complex 1Mechanistic Target of Rapamycin Complex 2Receptors, EstrogenTFE3 protein, human

Identifiers

PMID30733432
PMCPMC6367455
OpenAlexW2911737309

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.