Evidence map›Paper›PMID 30732576›Full record

ArticleJournal of neurodevelopmental disorders2019

Rare copy number variations affecting the synaptic gene DMXL2 in neurodevelopmental disorders.

Gregory Costain, Susan Walker, Bob Argiropoulos, Danielle A Baribeau, Anne S Bassett, Erik Boot, Koen Devriendt, Barbara Kellam, Christian R Marshall, Aparna Prasad and 6 more

Open access · goldAbstract read
In one paragraph

Article in Journal of neurodevelopmental disorders, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 3 countries.

Gregory CostainDivision of Clinical and Metabolic Genetics, The Hospital for Sick Children, Toronto, ON, Canada.
Susan WalkerThe Centre for Applied Genomics, The Hospital for Sick Children, Toronto, ON, Canada.
Bob ArgiropoulosDepartment of Medical Genetics, University of Calgary Cumming School of Medicine, Calgary, AB, Canada.
Danielle A BaribeauDepartment of Psychiatry, University of Toronto, Toronto, ON, Canada.
Anne S BassettDepartment of Psychiatry, University of Toronto, Toronto, ON, Canada.
Erik BootThe Dalglish Family 22q Clinic, Toronto General Hospital, Toronto, ON, Canada.
Koen DevriendtDepartment of Human Genetics, KU Leuven, Leuven, Flanders, Belgium.
Barbara KellamThe Centre for Applied Genomics, The Hospital for Sick Children, Toronto, ON, Canada.
Christian R MarshallThe Centre for Applied Genomics, The Hospital for Sick Children, Toronto, ON, Canada.
Aparna PrasadLineagen, Inc, 2677 East Parleys Way, Salt Lake City, UT, 84109, USA.
Moises A SerranoLineagen, Inc, 2677 East Parleys Way, Salt Lake City, UT, 84109, USA.
D James StavropoulosGenome Diagnostics, Department of Paediatric Laboratory Medicine, The Hospital for Sick Children, Toronto, ON, Canada.
Hope TwedeLineagen, Inc, 2677 East Parleys Way, Salt Lake City, UT, 84109, USA.
Joris R VermeeschDepartment of Human Genetics, KU Leuven, Leuven, Flanders, Belgium.
Jacob A S VorstmanDepartment of Psychiatry, University of Toronto, Toronto, ON, Canada.
Stephen W SchererThe Centre for Applied Genomics, The Hospital for Sick Children, Toronto, ON, Canada. stephen.scherer@sickkids.ca.ORCID 0000-0002-8326-1999
University of Toronto · CAHospital for Sick Children · CALineage Cell Therapeutics (United States) · USKU Leuven · BEToronto General Hospital · CAUniversity of Calgary · CA

Funding

Subject CollectionU10AA008401 · NIAAA · SUNY DOWNSTATE MEDICAL CENTER · PI Yunlong Liu · 1989 to 2026
$162.7M
JH/CIDR Genotyping for Genome-Wide Association StudiesU01HG004438 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2007 to 2011
$24.2M
The Collaborative Genetic Study of Nicotine DependenceP01CA089392 · NCI · WASHINGTON UNIVERSITY · PI BIERUT, LAURA J. · 2001 to 2012
$17.3M
RELAPSE: LINKING SCIENCE AND PRACTICEP50CA084724 · NCI · UNIVERSITY OF WISCONSIN MADISON · PI FIORE, MICHAEL C · 1999 to 2003
$8.9M
Tobacco Dependence: Treatment and OutcomesP50DA019706 · NIDA · UNIVERSITY OF WISCONSIN-MADISON · PI FIORE, MICHAEL C · 2004 to 2008
$8.6M
Genome Wide Association Coordinating CenterU01HG004446 · NHGRI · UNIVERSITY OF WASHINGTON · PI WEIR, BRUCE S. · 2007 to 2011
$6.6M
FAMILY STUDY OF COCAINE DEPENDENCER01DA013423 · NIDA · WASHINGTON UNIVERSITY · PI BIERUT, LAURA JEAN · 2000 to 2004
$2.2M
Study of Addiction: Genetics and EnvironmentU01HG004422 · NHGRI · WASHINGTON UNIVERSITY · PI BIERUT, LAURA J. · 2007 to 2010
$1.2M
NCI NIH HHS P01 CA089392NCI NIH HHS P50 CA084724NHGRI NIH HHS U01 HG004422NHGRI NIH HHS U01 HG004438NHGRI NIH HHS U01 HG004446NHLBI NIH HHS HHSN268200782096CNIAAA NIH HHS U10 AA008401NIDA NIH HHS P50 DA019706NIDA NIH HHS R01 DA013423Wellcome Trust
6 · The paper itself

Abstract

backgroundUltra-rare genetic variants, including non-recurrent copy number variations (CNVs) affecting important dosage-sensitive genes, are important contributors to the etiology of neurodevelopmental disorders (NDDs). Pairing family-based whole-genome sequencing (WGS) with detailed phenotype data can enable novel gene associations in NDDs.

methodsWe performed WGS of six members from a three-generation family, where three individuals each had a spectrum of features suggestive of a NDD. CNVs and sequence-level variants were identified and further investigated in disease and control databases.

resultsWe identified a novel 252-kb deletion at 15q21 that overlaps the synaptic gene DMXL2 and the gene GLDN. The microdeletion segregated in NDD-affected individuals. Additional rare inherited and de novo sequence-level variants were found that may also be involved, including a missense change in GRIK5. Multiple CNVs and loss-of-function sequence variants affecting DMXL2 were discovered in additional unrelated individuals with a range of NDDs.

conclusionsDisruption of DMXL2 may predispose to NDDs including autism spectrum disorder. The robust interpretation of private variants requires a multifaceted approach that incorporates multigenerational pedigrees and genome-wide and population-scale data.

Indexed as

DNA Copy Number VariationsWhole Genome SequencingAdaptor Proteins, Signal TransducingAdultAutism Spectrum DisorderChildFemaleHumansMaleMiddle AgedNerve Tissue ProteinsNeurodevelopmental DisordersPedigreeAdaptor Proteins, Signal TransducingDMXL2 protein, humanNerve Tissue ProteinsADHDAutismCopy number variationDMXL2Genome sequencingGRIK5

Identifiers

PMID30732576
PMCPMC6366120
OpenAlexW2914075307

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.