Evidence map›Paper›PMID 30731170›Full record

ArticleJournal of the American Academy of Dermatology2019

Estimating CDKN2A mutation carrier probability among global familial melanoma cases using GenoMELPREDICT.

Nicholas J Taylor, Nandita Mitra, Lu Qian, Marie-Françoise Avril, D Timothy Bishop, Brigitte Bressac-de Paillerets, William Bruno, Donato Calista, Francisco Cuellar, Anne E Cust and 33 more

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Academy of Dermatology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Identifying high-risk melanoma patients: The importance of acquiring a detailed family history.Journal of the European Academy of Dermatology and Venereology : JEADV · 2025
    Article
  2. Cutaneous melanoma.Nature reviews. Disease primers · 2025
    Review
  3. Article
  4. Article
  5. New Insights into Melanoma Tumor Syndromes.JID innovations : skin science from molecules to population health · 2022
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors at 20 institutions in 13 countries.

Nicholas J TaylorDepartment of Epidemiology and Biostatistics, Texas A&M University, College Station, Texas.
Nandita MitraDepartment of Biostatistics, Epidemiology, and Informatics, University of Pennsylvania, Philadelphia, Pennsylvania.
Lu QianDepartment of Cancer Epidemiology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, Florida.
Marie-Françoise AvrilAssistance Publique-Hôpitaux de Paris, Hôpital Cochin et Université Paris Descartes, Paris, France.
D Timothy BishopSection of Epidemiology and Biostatistics, Leeds Institute of Medical Research at St. James's, University of Leeds, Leeds, United Kingdom.
Brigitte Bressac-de PailleretsGustave Roussy, Université Paris-Saclay, Département de Biopathologie and Institut National de la Santé et de la Recherche Médicale U1186, Villejuif, France.
William BrunoDepartment of Internal Medicine and Medical Specialties, University of Genoa and Istituto de Ricovero e Cura a Carattere Scientifico AOU San Martino-IST, Genoa, Italy.
Donato CalistaDermatology Unit, Maurizio Bufalini Hospital, Cesena, Italy.
Francisco CuellarMelanoma Unit, Dermatology Department, Hospital Clinic Barcelona, Institut de Investigacions Biomediques August Pi Sunyer, Universitat de Barcelona, Barcelona, Spain.
Anne E CustSydney School of Public Health, The University of Sydney, Sydney, Australia; Melanoma Institute Australia, The University of Sydney, Sydney, Australia.
Florence DemenaisInstitut National de la Santé et de la Recherche Médicale UMR-946, Genetic Variation and Human Disease Unit, Université Paris Diderot, Paris, France.
David E ElderDepartment of Pathology and Laboratory Medicine, Hospital of the University of Pennsylvania, Philadelphia, Pennsylvania.
Anne-Marie GerdesDepartment of Clinical Genetics, University Hospital of Copenhagen, Copenhagen, Denmark.
Paola GhiorzoDepartment of Internal Medicine and Medical Specialties, University of Genoa and Istituto de Ricovero e Cura a Carattere Scientifico AOU San Martino-IST, Genoa, Italy.
Alisa M GoldsteinHuman Genetics Program, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland.
Thais C GrazziotinPontifícia Universidade Católica do Rio Grande do Sul, Porto Alegre, Brazil.
Nelleke A GruisDepartment of Dermatology, Leiden University Medical Centre, Leiden, the Netherlands.
Johan HanssonDepartment of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.
Mark HarlandSection of Epidemiology and Biostatistics, Leeds Institute of Medical Research at St. James's, University of Leeds, Leeds, United Kingdom.
Nicholas K HaywardQIMR Berghofer Medical Research Institute, Herston, Australia.
Marko HocevarInstitute of Oncology Ljubljana, Zaloska, Ljubljana, Slovenia.
Veronica HöiomDepartment of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.
Elizabeth A HollandMelanoma Institute Australia, The University of Sydney, Sydney, Australia; Westmead Institute for Medical Research, University of Sydney, Sydney, Australia.
Christian IngvarDepartment of Clinical Sciences, Lund University Hospital Lund, Sweden; Department of Surgery, Lund University Hospital, Lund, Sweden.
Maria Teresa LandiHuman Genetics Program, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland.
Gilles LandmanDepartment of Pathology, Escola Paulista de Medicina, Universidade Federal de São Paulo, São Paulo, Brazil.
Alejandra Larre-BorgesUnidad de Lesiones Pigmentadas, Cátedra de Dermatología, Hospital de Clínicas, Universidad de la República, Montevideo, Uruguay.
Graham J MannMelanoma Institute Australia, The University of Sydney, Sydney, Australia; Westmead Institute for Medical Research, University of Sydney, Sydney, Australia.
Eduardo NagoreDepartment of Dermatology, Instituto Valenciano de Oncologia, Valencia, Spain.
Håkan OlssonDepartment of Clinical Sciences, Lund University Hospital Lund, Sweden; Department of Surgery, Lund University Hospital, Lund, Sweden.
Jane M PalmerQIMR Berghofer Medical Research Institute, Herston, Australia.
Barbara PerićInstitute of Oncology Ljubljana, Zaloska, Ljubljana, Slovenia.
Dace PjanovaLatvian Biomedical Research and Study Centre, Riga, Latvia.
Antonia L PritchardQIMR Berghofer Medical Research Institute, Herston, Australia.
Susana PuigMelanoma Unit, Dermatology Department, Hospital Clinic Barcelona, Institut de Investigacions Biomediques August Pi Sunyer, Universitat de Barcelona, Barcelona, Spain; Centro de Investigacion Biomedica en Red de Enfermedades Raras, Instituto de Salud Carlos III, Barcelona, Spain.
Helen SchmidMelanoma Institute Australia, The University of Sydney, Sydney, Australia; Westmead Institute for Medical Research, University of Sydney, Sydney, Australia.
Nienke van der StoepDepartment of Clinical Genetics, Leiden University Medical Center Leiden, the Netherlands.
Margaret A TuckerHuman Genetics Program, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland.
Karin A W WadtDepartment of Clinical Genetics, University Hospital of Copenhagen, Copenhagen, Denmark.
Xiaohong R YangHuman Genetics Program, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland.
Julia A Newton-BishopSection of Epidemiology and Biostatistics, Leeds Institute of Medical Research at St. James's, University of Leeds, Leeds, United Kingdom.
Peter A KanetskyDepartment of Cancer Epidemiology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, Florida. Electronic address: peter.kanetsky@moffitt.org.
GenoMEL Study Group
QIMR Berghofer Medical Research Institute · AUUniversity of Leeds · GBCopenhagen University Hospital · DKDivision of Cancer Epidemiology and GeneticsInstitute of Oncology Ljubljana · SIKarolinska Institutet · SELeiden University Medical Center · NLLund University · SEMoffitt Cancer Center · USNational Cancer Institute · USUniversitat de Barcelona · ESUniversity of Genoa · ITUniversity of Sydney · AUAssistance Publique – Hôpitaux de Paris · FRFundación Instituto Valenciano de Oncología · ESHospital de Clínicas · UYHospital of the University of Pennsylvania · USLatvian Biomedical Research and Study Centre · LVMelanoma Institute Australia · AUOspedale “M. Bufalini” di Cesena · IT

Funding

UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Jared P Rutter · 1986 to 2026
$72.6M
Genetic Epidermiology of MelanomaR01CA083115 · NCI · UNIVERSITY OF PENNSYLVANIA · PI BISHOP, DAVID TIMOTHY, ELDER, DAVID ERIC · 2001 to 2017
$13.0M
Pathways from genotype and environment to melanomaR01CA088363 · NCI · QUEENSLAND INSTITUTE OF MEDICAL RESEARCH · PI HAYWARD, NICHOLAS K · 2001 to 2012
$2.4M
Moffitt Postdoctoral Training Program in Molecular & Genetic EpidemiologyR25CA147832 · NCI · H. LEE MOFFITT CANCER CTR & RES INST · PI EGAN, KATHLEEN M. · 2010 to 2014
$2.0M
Moffitt Postdoctoral Training Program in Molecular EpidemiologyT32CA147832 · NCI · H. LEE MOFFITT CANCER CTR & RES INST · PI KANETSKY, PETER A · 2015 to 2019
$659k
Cancer Research UK 10589Cancer Research UK 19167Medical Research Council MR/L01629X/1NCI NIH HHS P30 CA042014NCI NIH HHS R01 CA083115NCI NIH HHS R01 CA088363NCI NIH HHS R25 CA147832NCI NIH HHS T32 CA147832
6 · The paper itself

Abstract

backgroundAlthough rare in the general population, highly penetrant germline mutations in CDKN2A are responsible for 5%-40% of melanoma cases reported in melanoma-prone families. We sought to determine whether MELPREDICT was generalizable to a global series of families with melanoma and whether performance improvements can be achieved.

methodsIn total, 2116 familial melanoma cases were ascertained by the international GenoMEL Consortium. We recapitulated the MELPREDICT model within our data (GenoMELPREDICT) to assess performance improvements by adding phenotypic risk factors and history of pancreatic cancer. We report areas under the curve (AUC) with 95% confidence intervals (CIs) along with net reclassification indices (NRIs) as performance metrics.

resultsMELPREDICT performed well (AUC 0.752, 95% CI 0.730-0.775), and GenoMELPREDICT performance was similar (AUC 0.748, 95% CI 0.726-0.771). Adding a reported history of pancreatic cancer yielded discriminatory improvement (P < .0001) in GenoMELPREDICT (AUC 0.772, 95% CI 0.750-0.793, NRI 0.40). Including phenotypic risk factors did not improve performance.

conclusionThe MELPREDICT model functioned well in a global data set of familial melanoma cases. Adding pancreatic cancer history improved model prediction. GenoMELPREDICT is a simple tool for predicting CDKN2A mutational status among melanoma patients from melanoma-prone families and can aid in directing these patients to receive genetic testing or cancer risk counseling.

Indexed as

Genetic Predisposition to DiseaseLogistic ModelsPancreatic NeoplasmsAdolescentAdultAgedAged, 80 and overArea Under CurveChildCyclin-Dependent Kinase Inhibitor p16Genetic TestingGerm-Line MutationHeterozygoteHumansInternationalityMelanomaCDKN2A protein, humanCyclin-Dependent Kinase Inhibitor p16CDKN2Afamilial melanomaGenoMELGenoMELPREDICTmutation prediction

Identifiers

PMID30731170
PMCPMC6634996
OpenAlexW2913036100

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.