Evidence map›Paper›PMID 30730211›Full record

ArticleBioTechniques2019

Combining CRISPR/Cas9-mediated knockout with genetic complementation for in-depth mechanistic studies in human ES cells.

Zheng Wang, Yan Zhang, Yu-Wei Lee, Natalia B Ivanova

Open access · goldAbstract read
In one paragraph

Article in BioTechniques, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Zheng WangDepartment of Genetics and Yale Stem Cell Center, Yale University, New Haven, CT, USA.
Yan ZhangDepartment of Genetics and Yale Stem Cell Center, Yale University, New Haven, CT, USA.
Yu-Wei LeeDepartment of Genetics and Yale Stem Cell Center, Yale University, New Haven, CT, USA.
Natalia B IvanovaDepartment of Genetics and Yale Stem Cell Center, Yale University, New Haven, CT, USA.
Yale University · USYale Cancer Center · US

Funding

Novel differentiation repressor module in human ES cellsR01GM107092 · NIGMS · YALE UNIVERSITY · PI IVANOVA, NATALIA B · 2014 to 2022
$2.6M
Epigenetic control of the pluripotent state by chromatin-associated factor Dppa2R01GM105772 · NIGMS · YALE UNIVERSITY · PI IVANOVA, NATALIA B · 2014 to 2018
$1.6M
NIGMS NIH HHS R01 GM105772NIGMS NIH HHS R01 GM107092
6 · The paper itself

Abstract

Gene regulatory networks that control pluripotency of human embryonic stem cells (hESCs) are of considerable interest for regenerative medicine. RNAi and CRISPR/Cas9 technologies have allowed the identification of hESC regulators on a genome-wide scale. However, these technologies are ill-suited for mechanistic studies because knockdown/knockout clones of essential genes do not grow in culture. We have developed a genetic rescue strategy that combines CRISPR/Cas9-mediated knockout with TALEN-mediated integration of a doxycycline-inducible rescue transgene into a constitutive AASV1 locus. The resulting rescue clones are stable in culture, allow modulation of the rescue transgene dosage by titration of doxycycline in the media and can be combined with various molecular assays, thus providing mechanistic insights into gene function in a variety of cellular contexts.

Indexed as

CRISPR-Cas SystemsCells, CulturedDoxycyclineGene Expression RegulationGene Knockdown TechniquesGenetic Complementation TestHuman Embryonic Stem CellsHumansPolycomb Repressive Complex 1Proto-Oncogene ProteinsRepressor ProteinsRNA, Small InterferingSOXF Transcription FactorsTranscription Activator-Like Effector NucleasesTransgenesBCOR protein, humanDoxycyclinePolycomb Repressive Complex 1Proto-Oncogene ProteinsRepressor ProteinsRING1 protein, humanRNA, Small InterferingRNF2 protein, humanSOX17 protein, humanSOXF Transcription FactorsTranscription Activator-Like Effector NucleasesCRISPR/Cas9 mutagenesishuman embryonic stem cellspluripotencyself-renewal

Identifiers

PMID30730211
PMCPMC7408315
OpenAlexW2909579012

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.