Evidence map›Paper›PMID 30728961›Full record

ArticleLight, science & applications2019

PhaseStain: the digital staining of label-free quantitative phase microscopy images using deep learning.

Yair Rivenson, Tairan Liu, Zhensong Wei, Yibo Zhang, Kevin de Haan, Aydogan Ozcan

Open access · goldAbstract read
In one paragraph

Article in Light, science & applications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 168 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
168citing papers in PubMed, 1 pooled it
31.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

168 citing papers in PubMed, 1 synthesis or guideline pooled it, 407 citations in OpenAlex.

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108 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yair Rivenson *1Electrical and Computer Engineering Department, University of California, Los Angeles, CA 90095 USA.
Tairan Liu *1Electrical and Computer Engineering Department, University of California, Los Angeles, CA 90095 USA.
Zhensong Wei *1Electrical and Computer Engineering Department, University of California, Los Angeles, CA 90095 USA.
Yibo Zhang1Electrical and Computer Engineering Department, University of California, Los Angeles, CA 90095 USA.ORCID 0000-0002-5636-7085
Kevin de Haan1Electrical and Computer Engineering Department, University of California, Los Angeles, CA 90095 USA.
Aydogan Ozcan1Electrical and Computer Engineering Department, University of California, Los Angeles, CA 90095 USA.ORCID 0000-0002-0717-683X
California NanoSystems Institute · US

Funding

Label-free, non-invasive and cost-effective monitoring of HIV viral load using a nano-plasmonic sensor on a contact lensR21EB023115 · NIBIB · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI OZCAN, AYDOGAN · 2016 to 2017
$424k
NIBIB NIH HHS R21 EB023115
6 · The paper itself

Abstract

Using a deep neural network, we demonstrate a digital staining technique, which we term PhaseStain, to transform the quantitative phase images (QPI) of label-free tissue sections into images that are equivalent to the brightfield microscopy images of the same samples that are histologically stained. Through pairs of image data (QPI and the corresponding brightfield images, acquired after staining), we train a generative adversarial network and demonstrate the effectiveness of this virtual-staining approach using sections of human skin, kidney, and liver tissue, matching the brightfield microscopy images of the same samples stained with Hematoxylin and Eosin, Jones' stain, and Masson's trichrome stain, respectively. This digital-staining framework may further strengthen various uses of label-free QPI techniques in pathology applications and biomedical research in general, by eliminating the need for histological staining, reducing sample preparation related costs and saving time. Our results provide a powerful example of some of the unique opportunities created by data-driven image transformations enabled by deep learning.

Identifiers

PMID30728961
PMCPMC6363787
OpenAlexW2884160046

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.